Compatibility of the green fluorescent protein and a general nucleic acid stain for quantitative description of a Pseudomonas putida biofilm

• Published in: Journal of microbiological methods 2005-02, Vol.60 (2), p.179-187
• Main Authors: Nancharaiah, Y.V., Venugopalan, V.P., Wuertz, S., Wilderer, P.A., Hausner, M.
• Format: Article
• Language: English
• Subjects: Bacteriological methods and techniques used in bacteriology; Bacteriology; Biofilm; Biofilms - growth & development; Biogenesis of cell structures, supramolecular organization; Biological and medical sciences; CLSM; Dual fluorescence labeling; Fluorescent Dyes - analysis; Fundamental and applied biological sciences. Psychology; Green fluorescent protein (GFP); Green Fluorescent Proteins - biosynthesis; Green Fluorescent Proteins - genetics; Image Processing, Computer-Assisted; Microbiology; Microscopy, Confocal; Plasmids; Pseudomonas putida; Pseudomonas putida - genetics; Pseudomonas putida - metabolism; Pseudomonas putida - physiology; SYTO 60
• ISSN: 0167-7012; 1872-8359
• DOI: 10.1016/j.mimet.2004.09.016

Better understanding of biofilm development is essential for making optimal use of beneficial biofilms as well as for devising effective control strategies for detrimental biofilms. Analysis of biofilm structure and quantification of biofilm parameters using optical (including confocal) microscopy and digital image analysis techniques are becoming routine in many laboratories. The purpose of this study was to evaluate a dual labeling technique based on fluorescence signals from the green fluorescent protein (GFP) and those resulting from staining with the general nucleic acid stain SYTO 60 for the quantitative description of a model biofilm. For this purpose, a Pseudomonas putida KT2442 derivative was genetically tagged with the green fluorescent protein gene. Biofilm formation by this strain was investigated using flow cells and confocal laser scanning microscopy (CLSM). Percentage surface coverage as well as microcolony size quantified using GFP and SYTO 60 signals showed significant correlation ( R=0.99). The results indicated that intrinsic labelling of this model biofilm using constitutively expressed proteins such as GFP can be used for real-time biofilm observation and generation of reliable quantitative data, comparable to those obtained using conventional methods such as nucleic acid staining. Non-destructive time series observation of GFP-expressing biofilms in flow-cells can thus be confidently used for four-dimensional ( x, y, z, t) analysis and quantification of biofilm development. The results also point to the possibility of using GFP and SYTO 60 to study dual species biofilms, as quantitative data generated using both fluorophore signals are comparable.