Effects of Including an N-Terminal Insertion Region and Arginine-Mimetic Side Chains in Helical Peptoid Analogues of Lung Surfactant Protein B

• Published in: Biochemistry (Easton) 2006-10, Vol.45 (39), p.11809-11818
• Main Authors: Seurynck-Servoss, Shannon L, Dohm, Michelle T, Barron, Annelise E
• Format: Article
• Language: English
• Subjects: Arginine - chemistry; Humans; Hydrophobic and Hydrophilic Interactions; Lipids - chemistry; Peptoids - chemistry; Protein Structure, Secondary; Protein Structure, Tertiary; Pulmonary Surfactant-Associated Protein B - chemistry; Structure-Activity Relationship
• ISSN: 0006-2960; 1520-4995
• DOI: 10.1021/bi060617e

Surfactant protein B (SP-B) is one of two helical, amphipathic proteins critical for the biophysical functioning of lung surfactant (LS) and hence is an important therapeutic protein. This small, complex 79mer has three internal disulfide bonds and homodimerizes via another disulfide bridge. A helical, amphipathic 25mer from the amino terminus (SP-B1 - 25) exhibits surface-active properties similar to those of full-length, synthetic SP-B. In previous work, we created helical, non-natural mimics of SP-B1 - 25 based on sequence-specific peptoid 17mers and demonstrated their biomimetic surface activity. Like SP-B1 - 25, the peptoids were designed to adopt helical structures with cationic and nonpolar faces. Here, we compare the surface activities of six different helical peptoid analogues of SP-B1 - 25 to investigate the importance of mimicking its N-terminal insertion domain as well as its two arginine residues, both thought to be important for the peptide's proper function. Although the peptoid analogues of SP-B1 - 25 studied here share many similar features and all functionally mimic SP-B1 - 25 to some degree, it is notable that small differences in their sequences and side chain chemistries lead to substantial differences in their observed interactions with a lipid film. A peptoid comprising a hydrophobic, helical insertion region with aromatic side chains shows more biomimetic surface activity than simpler peptoids, and even better activity, by comparison to natural LS, than SP-B1 - 25. However, the substitution of lysine-like side chains for arginine-like side chains in the peptoid has little effect on biomimetic surface activity, indicating that interactions of the guanidino groups with lipids may not be critical for the function of these SP-B mimics.