Inhibition of Lysine 2,3-Aminomutase by the Alternative Substrate 4-Thialysine and Characterization of the 4-Thialysyl Radical Intermediate

• Published in: Archives of biochemistry and biophysics 2001-03, Vol.387 (2), p.281-288
• Main Authors: Miller, Jennifer, Bandarian, Vahe, Reed, George H., Frey, Perry A.
• Format: Article
• Language: English
• Subjects: Binding, Competitive - drug effects; Clostridium; Cysteine - analogs & derivatives; Cysteine - chemistry; Cysteine - metabolism; Cysteine - pharmacology; Electron Spin Resonance Spectroscopy; Enzyme Activation - drug effects; Free Radicals - analysis; Free Radicals - chemistry; Intramolecular Transferases - antagonists & inhibitors; Intramolecular Transferases - chemistry; Intramolecular Transferases - metabolism; Lysine - chemistry; Lysine - metabolism; Lysine - pharmacology; Molecular Conformation
• ISSN: 0003-9861; 1096-0384
• DOI: 10.1006/abbi.2001.2261

Lysine 2,3-aminomutase catalyzes the interconversion of l-lysine and l-β-lysine. 4-Thia-l-lysine (4-thialysine) is an alternative substrate for Lysine 2,3-aminomutase. The organic free radical that appears in the steady state of the reaction of 4-thialysine is structurally analogous to the first lysine-based radical in the chemical mechanism (Wu, W., Lieder, K. W., Reed, G. H., and Frey, P. A. (1995) Biochemistry 34, 10532–10537). 4-Thialysine is a much more potent inhibitor of the reaction of lysine than would be anticipated on the basis of the value of Km for its reaction as a substrate. 4-Thialysine is here shown to be a competitive reversible inhibitor with respect to l-lysine, displaying an inhibition constant of 0.12 ± 0.01 mM. The value of Km for 4-thialysine is 1.4 ± 0.1 mM, and the maximum velocity Vm = 0.19 ± 0.02 μmol min−1 mg−1 at 37°C and pH 8.0. The kinetic parameters for the reaction of lysine under the same conditions are: Km = 4.2 ± 0.5 mM and Vm = 43 ± 1 μmol min−1 mg−1. The discrepancy between Km and the apparent Ki for 4-thialysine arises from the fact that the maximal velocity for 4-thialysine is only 0.44% that for l-lysine. The electron paramagnetic resonance spectra of the organic radical generated at the active site from 4-thialysine and those generated from deuterium and 3-13C-labeled forms of 4-thialysine were analyzed by simulation. Based on the resulting hyperfine splitting constants, the conformation and distribution of the unpaired spin of the radical at the active site were evaluated.