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HIV-1 Drug Resistance Profiles in Children and Adults With Viral Load of <50 Copies/mL Receiving Combination Therapy

CONTEXT The continued release of human immunodeficiency virus type 1 (HIV-1) into plasma at very low levels during highly active antiretroviral therapy (HAART) can be detected using specialized techniques, but the nature and significance of this low-level viremia, especially as related to acquisitio...

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Published in:JAMA : the journal of the American Medical Association 2001-07, Vol.286 (2), p.196-207
Main Authors: Hermankova, Monika, Ray, Stuart C, Ruff, Christian, Powell-Davis, Monique, Ingersoll, Roxann, D'Aquila, Richard T, Quinn, Thomas C, Siliciano, Janet D, Siliciano, Robert F, Persaud, Deborah
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container_title JAMA : the journal of the American Medical Association
container_volume 286
creator Hermankova, Monika
Ray, Stuart C
Ruff, Christian
Powell-Davis, Monique
Ingersoll, Roxann
D'Aquila, Richard T
Quinn, Thomas C
Siliciano, Janet D
Siliciano, Robert F
Persaud, Deborah
description CONTEXT The continued release of human immunodeficiency virus type 1 (HIV-1) into plasma at very low levels during highly active antiretroviral therapy (HAART) can be detected using specialized techniques, but the nature and significance of this low-level viremia, especially as related to acquisition of drug resistance mutations, are unclear. OBJECTIVE To determine genetic resistance profiles of low-level plasma HIV-1 in patients with prolonged viral suppression (
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OBJECTIVE To determine genetic resistance profiles of low-level plasma HIV-1 in patients with prolonged viral suppression (&lt;50 copies/mL of plasma HIV-1 RNA) while receiving HAART. DESIGN AND SETTING Cross-sectional study conducted at a US academic hospital from November 1999 to February 2001 using a novel method for amplification of low levels of viral genomes in plasma. PATIENTS Eighteen HIV-1–infected patients (7 children and 11 adults), enrolled in a longitudinal study of HIV-1 reservoirs, who had suppression of viral replication while receiving protease inhibitor–containing combination therapy. Two patients (1 adult and 1 child) with less optimal suppression of viral replication were included to assess virus predominating when plasma HIV-1 RNA levels are low but detectable (&lt;1000 copies/mL). Follow-up analyses were conducted in 3 patients. MAIN OUTCOME MEASURE Detection of drug resistance mutations in clones amplified from low-level plasma virus. RESULTS Viral sequences were amplified from 8 of the 18 patients with simultaneous plasma HIV-1 measurements of less than 50 copies/mL and from 2 patients with 231 and 50 copies/mL. Clones from 3 treatment-naive patients with less than 50 copies/mL of plasma HIV-1 RNA showed continued release, for as long as 42 months, of wild-type drug-sensitive virus. The 7 patients with prior nonsuppressive therapy, with viral loads below 50 copies/mL and during "blips" to 231 and 64 copies/mL, had only resistance mutations consistent with pre-HAART therapy (although reverse transcriptase inhibitor mutations may have continued to occur). New HAART-related mutations were seen in a control patient with prior viral load levels of about 400 to 1000 copies/mL. For phylogenetic analysis, sequences were available for both resting CD4+ T cells and plasma HIV for 7 of 10 patients and showed patient-specific clustering of sequences and a close relationship between virus in the plasma and the latent reservoir. CONCLUSIONS Based on the samples that could be amplified, low-level viremia in children and adults receiving HAART with prolonged suppression of viremia to less than 50 copies/mL of HIV-1 RNA may result primarily from archival, pre-HAART virus, reflecting earlier treatment conditions, and does not appear to require development of new, HAART-selected mutations reflecting partial resistance to therapy. Low-level viremia below 50 copies/mL may represent less of a concern regarding impending drug failure of current HAART regimens. However, the archival drug-resistant virus may be relevant regarding future treatment strategies.</description><identifier>ISSN: 0098-7484</identifier><identifier>EISSN: 1538-3598</identifier><identifier>DOI: 10.1001/jama.286.2.196</identifier><identifier>PMID: 11448283</identifier><identifier>CODEN: JAMAAP</identifier><language>eng</language><publisher>Chicago, IL: American Medical Association</publisher><subject>Adult ; Anti-HIV Agents - pharmacology ; Anti-HIV Agents - therapeutic use ; Antibiotics. Antiinfectious agents. Antiparasitic agents ; Antiretroviral Therapy, Highly Active ; Antiviral agents ; Biological and medical sciences ; Child ; Child, Preschool ; Cross-Sectional Studies ; Drug resistance ; Drug Resistance, Microbial - genetics ; Drug therapy ; Female ; Gene Products, pol - genetics ; Genetics ; HIV ; HIV Infections - drug therapy ; HIV Infections - physiopathology ; HIV Infections - virology ; HIV Protease - genetics ; HIV Reverse Transcriptase - genetics ; HIV-1 - drug effects ; HIV-1 - genetics ; Human immunodeficiency virus ; Human immunodeficiency virus 1 ; Humans ; Male ; Medical sciences ; Middle Aged ; Molecular Sequence Data ; Mutation ; Pharmacology. Drug treatments ; Plasma ; RNA, Viral - blood ; Viral Load ; Viremia - diagnosis ; Viremia - physiopathology</subject><ispartof>JAMA : the journal of the American Medical Association, 2001-07, Vol.286 (2), p.196-207</ispartof><rights>2001 INIST-CNRS</rights><rights>Copyright American Medical Association Jul 11, 2001</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a357t-1782a8d3f3a3d47aa243641f2378be06e207359e3cc72bcc061ebb9946cafe33</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=1083250$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11448283$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hermankova, Monika</creatorcontrib><creatorcontrib>Ray, Stuart C</creatorcontrib><creatorcontrib>Ruff, Christian</creatorcontrib><creatorcontrib>Powell-Davis, Monique</creatorcontrib><creatorcontrib>Ingersoll, Roxann</creatorcontrib><creatorcontrib>D'Aquila, Richard T</creatorcontrib><creatorcontrib>Quinn, Thomas C</creatorcontrib><creatorcontrib>Siliciano, Janet D</creatorcontrib><creatorcontrib>Siliciano, Robert F</creatorcontrib><creatorcontrib>Persaud, Deborah</creatorcontrib><title>HIV-1 Drug Resistance Profiles in Children and Adults With Viral Load of &lt;50 Copies/mL Receiving Combination Therapy</title><title>JAMA : the journal of the American Medical Association</title><addtitle>JAMA</addtitle><description>CONTEXT The continued release of human immunodeficiency virus type 1 (HIV-1) into plasma at very low levels during highly active antiretroviral therapy (HAART) can be detected using specialized techniques, but the nature and significance of this low-level viremia, especially as related to acquisition of drug resistance mutations, are unclear. OBJECTIVE To determine genetic resistance profiles of low-level plasma HIV-1 in patients with prolonged viral suppression (&lt;50 copies/mL of plasma HIV-1 RNA) while receiving HAART. DESIGN AND SETTING Cross-sectional study conducted at a US academic hospital from November 1999 to February 2001 using a novel method for amplification of low levels of viral genomes in plasma. PATIENTS Eighteen HIV-1–infected patients (7 children and 11 adults), enrolled in a longitudinal study of HIV-1 reservoirs, who had suppression of viral replication while receiving protease inhibitor–containing combination therapy. Two patients (1 adult and 1 child) with less optimal suppression of viral replication were included to assess virus predominating when plasma HIV-1 RNA levels are low but detectable (&lt;1000 copies/mL). Follow-up analyses were conducted in 3 patients. MAIN OUTCOME MEASURE Detection of drug resistance mutations in clones amplified from low-level plasma virus. RESULTS Viral sequences were amplified from 8 of the 18 patients with simultaneous plasma HIV-1 measurements of less than 50 copies/mL and from 2 patients with 231 and 50 copies/mL. Clones from 3 treatment-naive patients with less than 50 copies/mL of plasma HIV-1 RNA showed continued release, for as long as 42 months, of wild-type drug-sensitive virus. The 7 patients with prior nonsuppressive therapy, with viral loads below 50 copies/mL and during "blips" to 231 and 64 copies/mL, had only resistance mutations consistent with pre-HAART therapy (although reverse transcriptase inhibitor mutations may have continued to occur). New HAART-related mutations were seen in a control patient with prior viral load levels of about 400 to 1000 copies/mL. For phylogenetic analysis, sequences were available for both resting CD4+ T cells and plasma HIV for 7 of 10 patients and showed patient-specific clustering of sequences and a close relationship between virus in the plasma and the latent reservoir. CONCLUSIONS Based on the samples that could be amplified, low-level viremia in children and adults receiving HAART with prolonged suppression of viremia to less than 50 copies/mL of HIV-1 RNA may result primarily from archival, pre-HAART virus, reflecting earlier treatment conditions, and does not appear to require development of new, HAART-selected mutations reflecting partial resistance to therapy. Low-level viremia below 50 copies/mL may represent less of a concern regarding impending drug failure of current HAART regimens. However, the archival drug-resistant virus may be relevant regarding future treatment strategies.</description><subject>Adult</subject><subject>Anti-HIV Agents - pharmacology</subject><subject>Anti-HIV Agents - therapeutic use</subject><subject>Antibiotics. Antiinfectious agents. Antiparasitic agents</subject><subject>Antiretroviral Therapy, Highly Active</subject><subject>Antiviral agents</subject><subject>Biological and medical sciences</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>Cross-Sectional Studies</subject><subject>Drug resistance</subject><subject>Drug Resistance, Microbial - genetics</subject><subject>Drug therapy</subject><subject>Female</subject><subject>Gene Products, pol - genetics</subject><subject>Genetics</subject><subject>HIV</subject><subject>HIV Infections - drug therapy</subject><subject>HIV Infections - physiopathology</subject><subject>HIV Infections - virology</subject><subject>HIV Protease - genetics</subject><subject>HIV Reverse Transcriptase - genetics</subject><subject>HIV-1 - drug effects</subject><subject>HIV-1 - genetics</subject><subject>Human immunodeficiency virus</subject><subject>Human immunodeficiency virus 1</subject><subject>Humans</subject><subject>Male</subject><subject>Medical sciences</subject><subject>Middle Aged</subject><subject>Molecular Sequence Data</subject><subject>Mutation</subject><subject>Pharmacology. 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OBJECTIVE To determine genetic resistance profiles of low-level plasma HIV-1 in patients with prolonged viral suppression (&lt;50 copies/mL of plasma HIV-1 RNA) while receiving HAART. DESIGN AND SETTING Cross-sectional study conducted at a US academic hospital from November 1999 to February 2001 using a novel method for amplification of low levels of viral genomes in plasma. PATIENTS Eighteen HIV-1–infected patients (7 children and 11 adults), enrolled in a longitudinal study of HIV-1 reservoirs, who had suppression of viral replication while receiving protease inhibitor–containing combination therapy. Two patients (1 adult and 1 child) with less optimal suppression of viral replication were included to assess virus predominating when plasma HIV-1 RNA levels are low but detectable (&lt;1000 copies/mL). Follow-up analyses were conducted in 3 patients. MAIN OUTCOME MEASURE Detection of drug resistance mutations in clones amplified from low-level plasma virus. RESULTS Viral sequences were amplified from 8 of the 18 patients with simultaneous plasma HIV-1 measurements of less than 50 copies/mL and from 2 patients with 231 and 50 copies/mL. Clones from 3 treatment-naive patients with less than 50 copies/mL of plasma HIV-1 RNA showed continued release, for as long as 42 months, of wild-type drug-sensitive virus. The 7 patients with prior nonsuppressive therapy, with viral loads below 50 copies/mL and during "blips" to 231 and 64 copies/mL, had only resistance mutations consistent with pre-HAART therapy (although reverse transcriptase inhibitor mutations may have continued to occur). New HAART-related mutations were seen in a control patient with prior viral load levels of about 400 to 1000 copies/mL. For phylogenetic analysis, sequences were available for both resting CD4+ T cells and plasma HIV for 7 of 10 patients and showed patient-specific clustering of sequences and a close relationship between virus in the plasma and the latent reservoir. CONCLUSIONS Based on the samples that could be amplified, low-level viremia in children and adults receiving HAART with prolonged suppression of viremia to less than 50 copies/mL of HIV-1 RNA may result primarily from archival, pre-HAART virus, reflecting earlier treatment conditions, and does not appear to require development of new, HAART-selected mutations reflecting partial resistance to therapy. Low-level viremia below 50 copies/mL may represent less of a concern regarding impending drug failure of current HAART regimens. However, the archival drug-resistant virus may be relevant regarding future treatment strategies.</abstract><cop>Chicago, IL</cop><pub>American Medical Association</pub><pmid>11448283</pmid><doi>10.1001/jama.286.2.196</doi><tpages>12</tpages></addata></record>
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ispartof JAMA : the journal of the American Medical Association, 2001-07, Vol.286 (2), p.196-207
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source JAMA: The Journal of the American Medical Association
subjects Adult
Anti-HIV Agents - pharmacology
Anti-HIV Agents - therapeutic use
Antibiotics. Antiinfectious agents. Antiparasitic agents
Antiretroviral Therapy, Highly Active
Antiviral agents
Biological and medical sciences
Child
Child, Preschool
Cross-Sectional Studies
Drug resistance
Drug Resistance, Microbial - genetics
Drug therapy
Female
Gene Products, pol - genetics
Genetics
HIV
HIV Infections - drug therapy
HIV Infections - physiopathology
HIV Infections - virology
HIV Protease - genetics
HIV Reverse Transcriptase - genetics
HIV-1 - drug effects
HIV-1 - genetics
Human immunodeficiency virus
Human immunodeficiency virus 1
Humans
Male
Medical sciences
Middle Aged
Molecular Sequence Data
Mutation
Pharmacology. Drug treatments
Plasma
RNA, Viral - blood
Viral Load
Viremia - diagnosis
Viremia - physiopathology
title HIV-1 Drug Resistance Profiles in Children and Adults With Viral Load of <50 Copies/mL Receiving Combination Therapy
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