Cloning, Characterization, Localization, and Mutational Screening of the Human BARX1 Gene

• Published in: Genomics (San Diego, Calif.) Calif.), 2000-09, Vol.68 (3), p.336-342
• Main Authors: Gould, Douglas B., Walter, Michael A.
• Format: Article
• Language: English
• Subjects: Amino Acid Sequence; Animals; Axenfeld-Reiger syndrome; BARX1 gene; Barx1 protein; Base Sequence; Biological and medical sciences; Chickens; chromosome 9; Cloning, Molecular; DNA Primers; Drosophila melanogaster - genetics; Exons; Eye Abnormalities - genetics; Female; Fundamental and applied biological sciences. Psychology; Gene Library; Genes. Genome; Homeodomain Proteins - biosynthesis; Homeodomain Proteins - chemistry; Homeodomain Proteins - genetics; Humans; Introns; iridogoniodysgenesis syndrome; Mice; Molecular and cellular biology; Molecular genetics; Molecular Sequence Data; Polymerase Chain Reaction; Recombinant Proteins - biosynthesis; Recombinant Proteins - chemistry; Sequence Alignment; Sequence Homology, Amino Acid; Transcription Factors - biosynthesis; Transcription Factors - chemistry; Transcription Factors - genetics
• ISSN: 0888-7543; 1089-8646
• DOI: 10.1006/geno.2000.6307

The Bar subclass of homeodomain proteins was first identified for its role in Drosophila eye development. The Bar subclass homolog, Barx1, has since been cloned in mouse and in chick. The expression of Barx1 in developing teeth and craniofacial mesenchyme of neural crest origin makes it a strong candidate for the related human disorders of Axenfeld–Reiger syndrome (ARS) and iridogoniodysgenesis syndrome (IGDS). Here we report the cloning and characterization of a novel human Bar class gene, human BARX1. Screening of a human fetal craniofacial library resulted in the isolation of a 1.6-kb full-length transcript. Sequence analysis indicated that human BARX1, mouse Barx1, and chick Barx1 show 100% identity at the amino acid level within their homeodomains. Human BARX1 is expressed in a number of tissues including testis and heart by Northern analysis and in iris and craniofacial tissues by PCR of cDNA libraries. BARX1 chromosomal localization to 9q12 was determined by radiation hybrid mapping. Intron/exon boundaries were established, and primers were generated to PCR amplify all four exons. A mutation screen was conducted in 55 patients affected with ARS, IGDS, or related ocular malformations. While six sequence polymorphisms were detected, no disease-causing mutations of BARX1 were observed.