Topological characterization and modeling of the 3D structure of lipase from Pseudomonas aeruginosa

• Published in: FEBS letters 1993-10, Vol.332 (1), p.143-149
• Main Authors: Jaeger, Karl-Erich, Ransac, Stéphane, Koch, Heinrich B., Ferrato, Francine, Dijkstra, Bauke W.
• Format: Article
• Language: English
• Subjects: Amino Acid Sequence; Animals; Bacteriology; Biological and medical sciences; Computer Simulation; Conformational property; Disulfides - analysis; DTT, dithiothreitol; ECL, enhanced chemiluminescence; Enzyme Activation; Fundamental and applied biological sciences. Psychology; Humans; Hydrolysis; Interfacial activation; Lipase - chemistry; Lipase - metabolism; Metabolism. Enzymes; Microbiology; Models, Molecular; Molecular modeling; Molecular Sequence Data; ORF, open reading frame; PBS, phoshate-buffered saline; Protein Conformation; Pseudomonas aeruginosa; Pseudomonas aeruginosa - enzymology; Sequence Homology, Amino Acid; Substrate Specificity
• ISSN: 0014-5793; 1873-3468
• DOI: 10.1016/0014-5793(93)80501-K

Lipase from Pseudomonas aeruginosa is a M r, 29 kDa protein with a single functional disulfide bond as shown by a shift in electrophoretic mobility after treatment with dithiothreitol and iodoacetamide. Limited proteolysis of lipase with Staphylococcus aureus protease V8 resulted in cleavage after amino acid residues Asp 38 and Glu 46. Comparison of the lipase amino acid sequence with those of other hydrolases with known 3D structures indicated that the folding pattern might be compatible with the α/β hydrolase fold, thereby allowing us to construct a 3D model which fitted the biochemical properties. The model predicts a catalytic triad consisting of Ser 82, Asp 229 and His 251, and contains a disulfide bond connecting residues Cys 183 and Cys 235. Residues Asp 38 and Glu 46 are located at the surface of the enzyme, whereas the disulfide bond is rather inaccessible, which is in agreement with the finding that the protein needed to be partly unfolded before a reduction of the disulfide bond could take place. A striking prediction from the model was the lack of a lid-like α-helical loop structure covering the active site which confers to other well-characterized lipases a unique property known as interfacial activation. Experimental determination of lipase activity under conditions where the substrate existed either as monomeric solutions or aggregates confirmed the absence of interfacial activation.