α-Helix Dipoles and Catalysis:  Absorption and Raman Spectroscopic Studies of Acyl Cysteine Proteases

• Published in: Biochemistry (Easton) 1996-09, Vol.35 (38), p.12495-12502
• Main Authors: Doran, John D, Carey, Paul R
• Format: Article
• Language: English
• Subjects: Acrylates - metabolism; Acylation; Binding Sites; Catalysis; Cathepsins - chemistry; Cathepsins - metabolism; Cloning, Molecular; Cysteine Endopeptidases - chemistry; Cysteine Endopeptidases - metabolism; Esters - chemistry; Esters - metabolism; Kinetics; Models, Molecular; Papain - chemistry; Papain - metabolism; Protein Engineering; Protein Structure, Secondary; Spectrum Analysis, Raman
• ISSN: 0006-2960; 1520-4995
• DOI: 10.1021/bi960649+

Raman and absorption spectroscopic data are combined with the deacylation rate constants for a series of acyl cysteine proteases to provide insight into the role of α-helix dipoles in rate acceleration. The Raman spectra, obtained by Raman difference spectroscopy, of (5-methylthienyl)acryloyl adducts with papain, cathepsins B and L, and two oxyanion hole mutants of cathepsin B (Q23S and Q23A) show that extensive polarization throughout the π-electron chain occurs for the bound acyl group in the active sites. A similar result is obtained using the specific chromophoric substrate ethyl 2-[(N-acetyl-l-phenylalanyl)amino]-3-(5-methylthienyl)acrylate. By using 13CO substitution it is possible to detect the acyl CO stretching frequency, νCO, for each acyl enzyme. A correlation between νCO and log k 3, where k 3 is the deacylation rate constant, is found where νCO increases with increasing reactivity. This is exactly the opposite sense to the relationship found for a series of acyl serine proteases [Carey & Tonge (1995) Acc. Chem. Res. 28, 8]. The opposite trend in the direction of the correlation for the acyl cysteine proteases is ascribed to the strong electron polarizing forces in the active site, due principally to the active-site α-helix dipole, giving rise to canonical (valence bond) forms of the acyl group which change the hybridization about the CO carbon atom. A correlation is also observed between the absorption maximum, λmax, and log k 3 for each acyl cysteine protease. As the deacylation rate increases, 214-fold across the series, λmax red-shifts from 367 to 384 nm. It is proposed that differential interactions between the active site's α-helix dipole and the acyl chromophore give rise to the observed changes in λmax, with the red shift being caused principally by interactions with the excited electronic state, which has a high degree of charge separation, and the dipole. Similar interactions between the dipole and the negatively charged tetrahedral intermediate, which resembles the transition state, are proposed as the source of differential rates in deacylation. It is interesting to note that similar energies are operating in both cases. A shift in λmax from 367 to 384 nm corresponds to a change in electronic absorption transition energies of 3.2 kcal/mol and a change of deacylation rate constants of 214-fold also corresponds to a change of activation energies of 3.2 kcal/mol.