L-Serine analogs form Schiff base and quinonoidal intermediates with Escherichia coli tryptophan synthase

• Published in: Biochemistry (Easton) 1989-05, Vol.28 (10), p.4140-4147
• Main Authors: Houben, Karl F, Kadima, Webe, Roy, Melinda, Dunn, Michael F
• Format: Article
• Language: English
• Subjects: Amino Acids - metabolism; Binding Sites; Escherichia coli - enzymology; Magnetic Resonance Spectroscopy; Protein Conformation; Quinones - metabolism; Schiff Bases - metabolism; serine; Serine - analogs & derivatives; Serine - metabolism; Structure-Activity Relationship; tryptophan synthase; Tryptophan Synthase - metabolism
• ISSN: 0006-2960; 1520-4995
• DOI: 10.1021/bi00436a003

Substrate analogues of L-serine have been found that react with the alpha 2 beta 2 complex of Escherichia coli tryptophan synthase. Upon reaction with alpha 2 beta 2, the analogues glycine, L-histidine, L-alanine, and D-histidine form chemical intermediates derived from reaction with enzyme-bound pyridoxal 5'-phosphate with characteristic UV-visible spectral bands. The spectra of the products of the glycine, L-histidine, and L-alanine reactions with alpha 2 beta 2 contain contributions from the external aldimine, the quinonoid species, and other intermediates along the catalytic pathway. Just as previously reported for the reaction of L-serine with beta 2 [Goldberg, M. E., York, S., & Stryer, L. (1968) Biochemistry 7, 3662-3667], the reactions of glycine, L-histidine, and L-alanine with the beta 2 form of tryptophan synthase yield spectra with no contributions from catalytic intermediates beyond the external aldimine. The kinetics of intermediate formation and comparisons of the time courses for the exchange of alpha-1H for solvent 2H catalyzed by alpha 2 beta 2 or beta 2 were found to be consistent with these assignments. Intermediates further along the tryptophan synthase catalytic pathway are stabilized to a greater degree in the alpha 2 beta 2 complex than in the beta 2 species alone. This observation strongly suggests that the association of alpha and beta subunits to form the native alpha 2 beta 2 species lowers the activation energies for the interconversion of the external aldimine with chemical species further along the catalytic path.