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Cytochrome-b variation in Apis mellifera samples and its association with COI-COII patterns
Five Mbo I (Mbo-A, Mbo-M, Mbo-C¹, Mbo-C² and Mbo-C³) and Hinf I (Hinf-1 to Hinf-5) patterns were observed in Apis mellifera samples after restriction of a 485 bp fragment of the mitochondrial cytochrome-b (cyt-b) gene. Associating the cyt-b Restriction fragment length polymorphism (RFLP) pattern of...
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Published in: | Genetica 2009-03, Vol.135 (2), p.149-155 |
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description | Five Mbo I (Mbo-A, Mbo-M, Mbo-C¹, Mbo-C² and Mbo-C³) and Hinf I (Hinf-1 to Hinf-5) patterns were observed in Apis mellifera samples after restriction of a 485 bp fragment of the mitochondrial cytochrome-b (cyt-b) gene. Associating the cyt-b Restriction fragment length polymorphism (RFLP) pattern of each sample to its respective previously established COI-COII (Dra I sites) pattern, five restriction patterns (Mbo-C¹, Mbo-C², Mbo-C³, Hinf-1 and Hinf-4) were observed in samples of maternal origin associated to the evolutionary branch C. No deletions or insertions were observed and the nucleotide substitution rate was estimated at 5.4%. Higher nucleotide diversity was observed among the branch C-haplotypes when compared with A and M lineages. Further studies are needed to confirm if the cyt-b + COI-COII haplotypes help to assign certain phylogeographic patterns to the branch C and to clarify phylogenetic relationships among A. mellifera subspecies. |
doi_str_mv | 10.1007/s10709-008-9264-8 |
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Associating the cyt-b Restriction fragment length polymorphism (RFLP) pattern of each sample to its respective previously established COI-COII (Dra I sites) pattern, five restriction patterns (Mbo-C¹, Mbo-C², Mbo-C³, Hinf-1 and Hinf-4) were observed in samples of maternal origin associated to the evolutionary branch C. No deletions or insertions were observed and the nucleotide substitution rate was estimated at 5.4%. Higher nucleotide diversity was observed among the branch C-haplotypes when compared with A and M lineages. Further studies are needed to confirm if the cyt-b + COI-COII haplotypes help to assign certain phylogeographic patterns to the branch C and to clarify phylogenetic relationships among A. mellifera subspecies.</description><identifier>ISSN: 0016-6707</identifier><identifier>EISSN: 1573-6857</identifier><identifier>DOI: 10.1007/s10709-008-9264-8</identifier><identifier>PMID: 18373204</identifier><language>eng</language><publisher>Dordrecht: Dordrecht : Springer Netherlands</publisher><subject>Animal Genetics and Genomics ; Animals ; Apis mellifera ; Bees - enzymology ; Bees - genetics ; Biomedical and Life Sciences ; Composite haplotypes ; Cytochrome ; Cytochrome-b ; Cytochromes b - genetics ; DNA, Mitochondrial - genetics ; Electron Transport Complex IV - genetics ; Electron Transport Complex IV - metabolism ; Evolutionary Biology ; Genetic Variation ; Haplotypes ; Human Genetics ; Life Sciences ; Microbial Genetics and Genomics ; mitochondrial DNA ; Plant Genetics and Genomics ; Polymorphism, Restriction Fragment Length ; Restriction Mapping ; RFLP-PCR ; Sequence Analysis, DNA</subject><ispartof>Genetica, 2009-03, Vol.135 (2), p.149-155</ispartof><rights>Springer Science+Business Media B.V. 2008</rights><rights>Springer Science+Business Media B.V. 2009</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c425t-8dd3a3718b4b524f7d7d3777d7c215814fe0c86b65d10d1794fb1235f71788653</citedby><cites>FETCH-LOGICAL-c425t-8dd3a3718b4b524f7d7d3777d7c215814fe0c86b65d10d1794fb1235f71788653</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18373204$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ferreira, Kátia M</creatorcontrib><creatorcontrib>e Silva, Otávio Lino</creatorcontrib><creatorcontrib>Arias, Maria C</creatorcontrib><creatorcontrib>Del Lama, Marco A</creatorcontrib><title>Cytochrome-b variation in Apis mellifera samples and its association with COI-COII patterns</title><title>Genetica</title><addtitle>Genetica</addtitle><addtitle>Genetica</addtitle><description>Five Mbo I (Mbo-A, Mbo-M, Mbo-C¹, Mbo-C² and Mbo-C³) and Hinf I (Hinf-1 to Hinf-5) patterns were observed in Apis mellifera samples after restriction of a 485 bp fragment of the mitochondrial cytochrome-b (cyt-b) gene. Associating the cyt-b Restriction fragment length polymorphism (RFLP) pattern of each sample to its respective previously established COI-COII (Dra I sites) pattern, five restriction patterns (Mbo-C¹, Mbo-C², Mbo-C³, Hinf-1 and Hinf-4) were observed in samples of maternal origin associated to the evolutionary branch C. No deletions or insertions were observed and the nucleotide substitution rate was estimated at 5.4%. Higher nucleotide diversity was observed among the branch C-haplotypes when compared with A and M lineages. Further studies are needed to confirm if the cyt-b + COI-COII haplotypes help to assign certain phylogeographic patterns to the branch C and to clarify phylogenetic relationships among A. mellifera subspecies.</description><subject>Animal Genetics and Genomics</subject><subject>Animals</subject><subject>Apis mellifera</subject><subject>Bees - enzymology</subject><subject>Bees - genetics</subject><subject>Biomedical and Life Sciences</subject><subject>Composite haplotypes</subject><subject>Cytochrome</subject><subject>Cytochrome-b</subject><subject>Cytochromes b - genetics</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Electron Transport Complex IV - genetics</subject><subject>Electron Transport Complex IV - metabolism</subject><subject>Evolutionary Biology</subject><subject>Genetic Variation</subject><subject>Haplotypes</subject><subject>Human Genetics</subject><subject>Life Sciences</subject><subject>Microbial Genetics and Genomics</subject><subject>mitochondrial DNA</subject><subject>Plant Genetics and Genomics</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>Restriction Mapping</subject><subject>RFLP-PCR</subject><subject>Sequence Analysis, DNA</subject><issn>0016-6707</issn><issn>1573-6857</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNp9kc1u1DAUhS0EokPhAdhAxAJWhnvt2NdZViN-RqrUBXTFwnISp3U1iYOdoerb41FGqsSiC-ss_N3jn4-xtwifEYC-ZASChgMY3ghdc_OMbVCR5Nooes42AKi5JqAz9irnOwBoSDcv2RkaSVJAvWG_tw9L7G5THD1vq78uBbeEOFVhqi7mkKvR7_dh8MlV2Y3z3ufKTX0VlpI5x-5E34flttpe7XhZu2p2y-LTlF-zF4PbZ__mlOfs-tvXX9sf_PLq-257ccm7WqiFm76XThKatm6VqAfqqZdEJTqBymA9eOiMbrXqEXqkph5aFFINhGSMVvKcfVp75xT_HHxe7BhyVy7uJh8P2RqlSYtGQiE_PklqbUz5I1PAD_-Bd_GQpvIKK6QmUzcaC4Qr1KWYc_KDnVMYXXqwCPYoyK6CbBFkj4LssfjdqfjQjr5_nDgZKYBYgVy2phufHk9-qvX9OjS4aN1NCtle_xSAElA1IEr5P48Yolk</recordid><startdate>20090301</startdate><enddate>20090301</enddate><creator>Ferreira, Kátia M</creator><creator>e Silva, Otávio Lino</creator><creator>Arias, Maria C</creator><creator>Del Lama, Marco A</creator><general>Dordrecht : Springer Netherlands</general><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7TK</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20090301</creationdate><title>Cytochrome-b variation in Apis mellifera samples and its association with COI-COII patterns</title><author>Ferreira, Kátia M ; e Silva, Otávio Lino ; Arias, Maria C ; Del Lama, Marco A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c425t-8dd3a3718b4b524f7d7d3777d7c215814fe0c86b65d10d1794fb1235f71788653</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Animal Genetics and Genomics</topic><topic>Animals</topic><topic>Apis mellifera</topic><topic>Bees - enzymology</topic><topic>Bees - genetics</topic><topic>Biomedical and Life Sciences</topic><topic>Composite haplotypes</topic><topic>Cytochrome</topic><topic>Cytochrome-b</topic><topic>Cytochromes b - genetics</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Electron Transport Complex IV - genetics</topic><topic>Electron Transport Complex IV - metabolism</topic><topic>Evolutionary Biology</topic><topic>Genetic Variation</topic><topic>Haplotypes</topic><topic>Human Genetics</topic><topic>Life Sciences</topic><topic>Microbial Genetics and Genomics</topic><topic>mitochondrial DNA</topic><topic>Plant Genetics and Genomics</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>Restriction Mapping</topic><topic>RFLP-PCR</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ferreira, Kátia M</creatorcontrib><creatorcontrib>e Silva, Otávio Lino</creatorcontrib><creatorcontrib>Arias, Maria C</creatorcontrib><creatorcontrib>Del Lama, Marco A</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>ProQuest Health and Medical</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>ProQuest Biological Science Journals</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Genetica</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ferreira, Kátia M</au><au>e Silva, Otávio Lino</au><au>Arias, Maria C</au><au>Del Lama, Marco A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Cytochrome-b variation in Apis mellifera samples and its association with COI-COII patterns</atitle><jtitle>Genetica</jtitle><stitle>Genetica</stitle><addtitle>Genetica</addtitle><date>2009-03-01</date><risdate>2009</risdate><volume>135</volume><issue>2</issue><spage>149</spage><epage>155</epage><pages>149-155</pages><issn>0016-6707</issn><eissn>1573-6857</eissn><abstract>Five Mbo I (Mbo-A, Mbo-M, Mbo-C¹, Mbo-C² and Mbo-C³) and Hinf I (Hinf-1 to Hinf-5) patterns were observed in Apis mellifera samples after restriction of a 485 bp fragment of the mitochondrial cytochrome-b (cyt-b) gene. Associating the cyt-b Restriction fragment length polymorphism (RFLP) pattern of each sample to its respective previously established COI-COII (Dra I sites) pattern, five restriction patterns (Mbo-C¹, Mbo-C², Mbo-C³, Hinf-1 and Hinf-4) were observed in samples of maternal origin associated to the evolutionary branch C. No deletions or insertions were observed and the nucleotide substitution rate was estimated at 5.4%. Higher nucleotide diversity was observed among the branch C-haplotypes when compared with A and M lineages. Further studies are needed to confirm if the cyt-b + COI-COII haplotypes help to assign certain phylogeographic patterns to the branch C and to clarify phylogenetic relationships among A. mellifera subspecies.</abstract><cop>Dordrecht</cop><pub>Dordrecht : Springer Netherlands</pub><pmid>18373204</pmid><doi>10.1007/s10709-008-9264-8</doi><tpages>7</tpages></addata></record> |
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subjects | Animal Genetics and Genomics Animals Apis mellifera Bees - enzymology Bees - genetics Biomedical and Life Sciences Composite haplotypes Cytochrome Cytochrome-b Cytochromes b - genetics DNA, Mitochondrial - genetics Electron Transport Complex IV - genetics Electron Transport Complex IV - metabolism Evolutionary Biology Genetic Variation Haplotypes Human Genetics Life Sciences Microbial Genetics and Genomics mitochondrial DNA Plant Genetics and Genomics Polymorphism, Restriction Fragment Length Restriction Mapping RFLP-PCR Sequence Analysis, DNA |
title | Cytochrome-b variation in Apis mellifera samples and its association with COI-COII patterns |
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