Detection of benzo(a)pyrene photodegradation products using DNA electrochemical sensors

• Published in: Biosensors & bioelectronics 2012-01, Vol.31 (1), p.270-276
• Main Authors: Del Carlo, M., Di Marcello, M., Giuliani, M., Sergi, M., Pepe, A., Compagnone, D.
• Format: Article
• Language: English
• Subjects: Benzo(a)pyrene; Benzopyrenes - analysis; Benzopyrenes - chemistry; Benzopyrenes - radiation effects; Biological and medical sciences; Biosensing Techniques - instrumentation; Biotechnology; Conductometry - instrumentation; DNA - analysis; DNA - chemistry; DNA - genetics; DNA electrochemical sensors; Equipment Design; Equipment Failure Analysis; Fundamental and applied biological sciences. Psychology; Genotoxicity; Light; Oligonucleotide Array Sequence Analysis - instrumentation; PAHs; Photooxidation; Reproducibility of Results; Salmonidae; Screen-printed electrodes; Sensitivity and Specificity
• ISSN: 0956-5663; 1873-4235
• DOI: 10.1016/j.bios.2011.10.030

► We studied the interaction between photooxidised products of benzopirene and DNA using electrochemical sensor based on screen printed electrodes. ► The products are detectable using a ssDNA genomic sensor down to nanomolar range. ► Using oligonucleotides with amplified enzymatic detection, the products of photooxidation reaction form an adduct with the guanines and are able to inhibit the hybridisation reaction. The reactivity of photodegradation products of benzo(a)pyrene vs. DNA has been assessed using both genomic and oligonucleotide based DNA electrochemical sensors. The kinetic of a photooxidation reaction of benzo(a)pyrene (BaP) carried out in controlled conditions using a 6W UV lamp peaked at 365nm has been studied using LC with fluorimetric detection. Degradation of benzo(a)pyrene by both UV and UV/H2O2 exhibited pseudo-first-order reaction kinetics with half-lives ranging from 3.0 to 9.8h depending on the pH and on the amount of H2O2. The oxidation products of benzo(a)pyrene obtained in different conditions were tested on genomic ssDNA electrochemical sensors obtained via immobilisation of salmon testis ss-DNA on graphite screen-printed electrodes. Guanines oxidation signals obtained using chronopotentiometry were used to detect the interaction of the products with DNA. The dose–response curve obtained with benzo(a)pyrene incubated 24h at pH 4.7 was different from that of the parent compound indicating a different type of interaction with DNA. A DNA hybridisation sensor was also assembled using a thiolated/biotynilated 24-mer oligonucleotide immobilised on a gold screen-printed electrode and avidin–alkaline phosphatase conjugate. A voltammetric detection of naphtol was used to detect the hybridisation reaction. A net inhibition of the hybridisation reaction was observed after incubation with benzo(a)pyrene oxidation products that was attributed to the formation of stable adducts with the guanines of the biotinylated strand. LC–MS–MS studies of the oxidation products confirmed the presence of chemical species potentially forming adducts with DNA. The data reported demonstrate that DNA electrochemical sensors have the potential to be used to monitor remediation processes and to assess the potential toxicity vs. DNA of chemicals forming stable DNA adducts.