G-Quadruplex Motifs Arranged in Tandem Occurring in Telomeric Repeats and the Insulin-Linked Polymorphic Region

To date, various G-quadruplex structures have been reported in the human genome. There are numerous studies focusing on quadruplex-forming sequences in general, but few studies have focused on two or more quadruplexes in the same molecule, which are most commonly found in telomeric DNA and other tan...

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Bibliographic Details
Published in:Biochemistry (Easton) 2011-09, Vol.50 (35), p.7484-7492
Main Authors: Bauer, Luboš, Tlučková, Katarina, Tóthová, Petra, Viglaský, Viktor
Format: Article
Language:English
Subjects:
Amino Acid Motifs - genetics
Base Sequence - genetics
Circular Dichroism
Electrophoresis, Polyacrylamide Gel
G-Quadruplexes
Genetic Linkage
Humans
Insulin - chemistry
Insulin - genetics
Polymorphism, Genetic
Spectrophotometry, Ultraviolet
Tandem Repeat Sequences - genetics
Telomere - chemistry
Telomere - genetics
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Summary:To date, various G-quadruplex structures have been reported in the human genome. There are numerous studies focusing on quadruplex-forming sequences in general, but few studies have focused on two or more quadruplexes in the same molecule, which are most commonly found in telomeric DNA and other tandem repeats, e.g., insulin-linked polymorphic region (ILPR). Although the human telomere consists of a number of repeats, higher-order G-quadruplex structures are discussed less often because of the complexity of the structures. In this study, sequences consisting of 4–12 repeats of d­(G4TGT), d­(G3T2A), and/or d­(G4T2A) have been studied by circular dichroism, ultraviolet spectroscopy, and temperature-gradient gel electrophoresis. These sequences serve as a model for the arrangement of quadruplexes in the telomere and ILPR in solution. Our major findings are as follows. (i) The number of G-rich repeats has a great influence on G-quadruplex stability. (ii) The evidence of quadruplex–quadruplex interaction is confirmed. (iii) For the first time, we directly observed the melting behavior of different conformers in a single experiment. Our results agree with other calorimetric and spectroscopic data and data obtained by single-molecule studies, atomic force microscopy, and mechanical unfolding by optical tweezers. We propose that the end of telomeres can be formed by only a few tandem quadruplexes (fewer than three). Our findings improve our understanding of the mechanism of G-quadruplex formation in long repeats in G-rich-regulating parts of genes and telomere ends.
ISSN:0006-2960
1520-4995
DOI:10.1021/bi2003235