O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins

O-GLYCBASE is an updated database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the SWISS-PROT database. Entries include information about species, sequence, glycosylation sites and glycan type. O-GLYCBASE is no...

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Published in:Nucleic acids research 1997, Vol.25 (1), p.278-282
Main Authors: Hansen, J.E, Lund, O, Rapacki, K, Brunak, S
Format: Article
Language:English
Subjects:
Algorithms
Amino Acid Sequence
Animals
chemical structure
Databases, Factual
glycoproteins
Glycoproteins - chemistry
Glycosylation
Humans
information retrieval
Molecular Sequence Data
Mucins - chemistry
oligosaccharides
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cited_by cdi_FETCH-LOGICAL-c502t-cd7b0abee6fc5e628c5e11c0279330eb2a68759cdcf7ea303ad76d197cb30f803
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container_end_page 282
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container_title Nucleic acids research
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creator Hansen, J.E
Lund, O
Rapacki, K
Brunak, S
description O-GLYCBASE is an updated database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the SWISS-PROT database. Entries include information about species, sequence, glycosylation sites and glycan type. O-GLYCBASE is now fully cross-referenced to the SWISS-PROT; PIR, PROSITE, PDB, EMBL, HSSP, LISTA and MIM databases. Compared with version 1.0 the number of entries have increased by 34%. Revision of the O-glycan assignment was performed on 20% of the entries. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through WWW or by anonymous FTP.
doi_str_mv 10.1093/nar/25.1.278
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subjects Algorithms
Amino Acid Sequence
Animals
chemical structure
Databases, Factual
glycoproteins
Glycoproteins - chemistry
Glycosylation
Humans
information retrieval
Molecular Sequence Data
Mucins - chemistry
oligosaccharides
title O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins
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