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Comparative sequence analysis of tmRNA
Minimal secondary structures of the bacterial and plastid tmRNAs were derived by comparative analyses of 50 aligned tmRNA sequences. The structures include 12 helices and four pseudoknots and are refinements of earlier versions, but include only those base pairs for which there is comparative eviden...
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Published in: | Nucleic acids research 1999-05, Vol.27 (10), p.2063-2071 |
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container_end_page | 2071 |
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container_title | Nucleic acids research |
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creator | Zwieb, Christian Wower, Iwona Wower, Jacek |
description | Minimal secondary structures of the bacterial and plastid tmRNAs were derived by comparative analyses of 50 aligned tmRNA sequences. The structures include 12 helices and four pseudoknots and are refinements of earlier versions, but include only those base pairs for which there is comparative evidence. Described are the conserved and variable features of the tmRNAs from a wide phylogenetic spectrum, the structural properties specific to the bacterial subgroups and preliminary 3-dimensional models from the pseudoknotted regions. |
doi_str_mv | 10.1093/nar/27.10.2063 |
format | article |
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subjects | Bacteria - chemistry Bacteria - genetics Base Sequence Models, Molecular Molecular Sequence Data Nucleic Acid Conformation RNA, Bacterial - chemistry RNA, Bacterial - genetics RNA, Messenger - chemistry RNA, Messenger - genetics RNA, Transfer - chemistry RNA, Transfer - genetics Sequence Analysis, RNA Sequence Homology, Nucleic Acid |
title | Comparative sequence analysis of tmRNA |
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