Array analysis of gene expression in connexin-43 null astrocytes

• Published in: Physiological genomics 2003-11, Vol.15 (3), p.177-190
• Main Authors: Iacobas, Dumitru A, Urban-Maldonado, Marcia, Iacobas, Sanda, Scemes, Eliana, Spray, David C
• Format: Article
• Language: English
• Subjects: Animals; Apoptosis - genetics; Apoptosis - physiology; Astrocytes - chemistry; Astrocytes - cytology; Astrocytes - metabolism; Astrocytes - physiology; Cell Communication - genetics; Cell Communication - physiology; Cell Cycle - genetics; Cell Cycle - physiology; Cell Differentiation - genetics; Cell Differentiation - physiology; Cells, Cultured; connexin 43; Connexin 43 - deficiency; Connexin 43 - genetics; Connexin 43 - physiology; Cx43 gene; DNA microarrays; Female; Gap Junctions - genetics; Gap Junctions - physiology; Gene Expression Profiling - methods; Gene Expression Profiling - statistics & numerical data; Gene Expression Regulation; Genetic Variation; Genotype; Male; Mice; Mice, Inbred C57BL; Mice, Knockout; Oligonucleotide Array Sequence Analysis - methods; Oligonucleotide Array Sequence Analysis - statistics & numerical data; Transcription, Genetic
• ISSN: 1094-8341; 1531-2267
• DOI: 10.1152/physiolgenomics.00062.2003

Department of Neuroscience, Albert Einstein College of Medicine, New York 10461 Connexin-43 (Cx43) is the most abundant gap junction protein in brain, where it is found primarily between astrocytes. Although the morphology of astrocytes from Cx43-null (knockout, KO) mice is similar to that of wild-type (WT) astrocytes, KO astrocytes exhibit reduced growth rate in culture. To evaluate the impact of deletion of Cx43 on other genes, including those encoding cell cycle proteins, we used DNA arrays to determine expression patterns in cultured astrocytes from sibling Cx43-null and WT mice. RNA samples extracted from astrocytes cultured from WT and Cx43-null neonatal mice were dye labeled and individually cohybridized with a reference of labeled cDNAs pooled from a variety of tissues on 8 gene arrays containing 8,975 mouse DNA sequences. Normal variability in expression of each gene was evaluated and incorporated into "expression scores" to statistically compare expression levels between WT and KO samples. In Cx43-null astrocytes, 4.1% of the 4,998 adequately quantifiable spots were found to have significantly ( P < 0.05) decreased hybridization compared with controls, and 9.4% of the spots showed significantly higher hybridization. The significantly different spots corresponded to RNAs encoding 252 known proteins, many not previously linked to gap junctions, including transcription factors, channels and transporters, cell growth and death signals, enzymes and cell adhesion molecules. These data indicate a surprisingly high degree of impact of deletion of Cx43 on other astrocyte genes, implying that gap junction gene expression alters numerous processes in addition to intercellular communication. glia; gap junction; knockout; DNA array; intercellular communication