The Novel Fold of Scytovirin Reveals a New Twist For Antiviral Entry Inhibitors

• Published in: Journal of molecular biology 2007-06, Vol.369 (2), p.451-461
• Main Authors: McFeeters, Robert L., Xiong, Changyun, O’Keefe, Barry R., Bokesch, Heidi R., McMahon, James B., Ratner, Daniel M., Castelli, Riccardo, Seeberger, Peter H., Byrd, R. Andrew
• Format: Article
• Language: English
• Subjects: Amino Acid Sequence; Anti-HIV Agents - chemistry; Anti-HIV Agents - metabolism; antiviral; Bacterial Proteins - chemistry; Bacterial Proteins - genetics; Bacterial Proteins - metabolism; Binding Sites; carbohydrate; Carbohydrate Sequence; Carrier Proteins - chemistry; Carrier Proteins - genetics; Carrier Proteins - metabolism; Cyanophyta; Disulfides - chemistry; hevein; HIV; Human immunodeficiency virus; Humans; Lectins - chemistry; Lectins - genetics; Lectins - metabolism; Models, Molecular; Molecular Sequence Data; Molecular Structure; Nuclear Magnetic Resonance, Biomolecular; Oligosaccharides - chemistry; Oligosaccharides - metabolism; Protein Binding; Protein Folding; Protein Structure, Tertiary; Recombinant Proteins - chemistry; Recombinant Proteins - genetics; Recombinant Proteins - metabolism; Scytonema; scytovirin
• ISSN: 0022-2836; 1089-8638
• DOI: 10.1016/j.jmb.2007.03.030

The solution structure of the potent 95 residue anti-HIV protein scytovirin has been determined and two carbohydrate-binding sites have been identified. This unique protein, containing five structurally important disulfide bonds, demonstrates a novel fold with no elements of extended regular secondary structure. Scytovirin contains two 39 residue sequence repeats, differing in only three amino acid residues, and each repeat has primary sequence similarity to chitin binding proteins. Both sequence repeats form similarly structured domains, with the exception of one region. The result is two carbohydrate-binding sites with substantially different affinities. The unusual fold clusters aromatic residues in both sites, suggesting a binding mechanism similar to other known hevein-like carbohydrate-binding proteins but differing in carbohydrate specificity. Scytovirin, originally isolated from the cyanobacterium Scytonema varium, holds potential as an HIV entry inhibitor for both therapeutic and prophylactic anti-HIV applications. The high-resolution structural studies reported are an important initial step in unlocking the therapeutic potential of scytovirin.