DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS

We introduce web interfaces for two recent extensions of the multiple-alignment program DIALIGN. DIALIGN-TX combines the greedy heuristic previously used in DIALIGN with a more traditional 'progressive' approach for improved performance on locally and globally related sequence sets. In add...

Full description

Saved in:
Bibliographic Details
Published in:Nucleic acids research 2010-07, Vol.38 (Web Server issue), p.W19-W22
Main Authors: Subramanian, Amarendran R, Hiran, Suvrat, Steinkamp, Rasmus, Meinicke, Peter, Corel, Eduardo, Morgenstern, Burkhard
Format: Article
Language:English
Subjects:
Internet
Protein Structure, Secondary
Sequence Alignment - methods
Sequence Analysis, Protein
Software
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:We introduce web interfaces for two recent extensions of the multiple-alignment program DIALIGN. DIALIGN-TX combines the greedy heuristic previously used in DIALIGN with a more traditional 'progressive' approach for improved performance on locally and globally related sequence sets. In addition, we offer a version of DIALIGN that uses predicted protein secondary structures together with primary sequence information to construct multiple protein alignments. Both programs are available through 'Göttingen Bioinformatics Compute Server' (GOBICS).
ISSN:0305-1048
1362-4962
1362-4962
DOI:10.1093/nar/gkq442