SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information

Genome annotation and access to information from large-scale experimental approaches at the genome level are essential to improve our understanding of living cells and organisms. This is even more the case for model organisms that are the basis to study pathogens and technologically important specie...

Full description

Saved in:
Bibliographic Details
Published in:Nucleic acids research 2014-01, Vol.42 (Database issue), p.D692-D698
Main Authors: Michna, Raphael H, Commichau, Fabian M, Tödter, Dominik, Zschiedrich, Christopher P, Stülke, Jörg
Format: Article
Language:English
Subjects:
Bacillus subtilis - genetics
Bacillus subtilis - metabolism
Bacillus subtilis - physiology
Bacterial Proteins - metabolism
Databases, Genetic
Gene Expression
Gene Expression Profiling
Genes, Bacterial
Genes, Essential
Genome, Bacterial
Internet
IV. Viruses, bacteria, protozoa and fungi
Metabolic Networks and Pathways
Models, Biological
Protein Interaction Maps
RNA, Bacterial - metabolism
Spores, Bacterial - genetics
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites
container_end_page D698
container_issue Database issue
container_start_page D692
container_title Nucleic acids research
container_volume 42
creator Michna, Raphael H
Commichau, Fabian M
Tödter, Dominik
Zschiedrich, Christopher P
Stülke, Jörg
description Genome annotation and access to information from large-scale experimental approaches at the genome level are essential to improve our understanding of living cells and organisms. This is even more the case for model organisms that are the basis to study pathogens and technologically important species. We have generated SubtiWiki, a database for the Gram-positive model bacterium Bacillus subtilis (http://subtiwiki.uni-goettingen.de/). In addition to the established companion modules of SubtiWiki, SubtiPathways and SubtInteract, we have now created SubtiExpress, a third module, to visualize genome scale transcription data that are of unprecedented quality and density. Today, SubtiWiki is one of the most complete collections of knowledge on a living organism in one single resource.
doi_str_mv 10.1093/nar/gkt1002
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3965029</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1490753003</sourcerecordid><originalsourceid>FETCH-LOGICAL-p266t-3dbe49362020c8edd61b9cd9e6c16fb207e4d44b64e50f6d0c5c7b1dbdf84ced3</originalsourceid><addsrcrecordid>eNpVkM1v1DAQxS1ERZfCiTvykQOh4494kwsSrfiSKnEAxDGa2JNds44TbIe2_z1ZUVB7Go3em9_TG8ZeCHgjoFXnEdP57lAEgHzENkIZWenWyMdsAwrqSoBuTtnTnH8CCC1q_YSdSi22Dchmw26-Ln3xP_zBV8gdFuwxEx-mxMue-Dg5CnxKO4w-j_wCrQ9hyTwfj4LPqwkLDz4eMp-x7K_x9jX3sVBCW_wUOUbH6WZOlPNx9XElj3iUnrGTAUOm53fzjH3_8P7b5afq6svHz5fvrqpZGlMq5XrS7doJJNiGnDOib61ryVhhhl7ClrTTujeaahiMA1vbbS9c74ZGW3LqjL39y52XfiRnKZaEoZuTHzHddhP67qES_b7bTb871ZoaZLsCXt0B0vRroVy60WdLIWCkacmd0C1sawWgVuvL-1n_Q_69W_0BulqG3A</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1490753003</pqid></control><display><type>article</type><title>SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information</title><source>PubMed Central</source><source>Oxford Open Access Journals</source><creator>Michna, Raphael H ; Commichau, Fabian M ; Tödter, Dominik ; Zschiedrich, Christopher P ; Stülke, Jörg</creator><creatorcontrib>Michna, Raphael H ; Commichau, Fabian M ; Tödter, Dominik ; Zschiedrich, Christopher P ; Stülke, Jörg</creatorcontrib><description>Genome annotation and access to information from large-scale experimental approaches at the genome level are essential to improve our understanding of living cells and organisms. This is even more the case for model organisms that are the basis to study pathogens and technologically important species. We have generated SubtiWiki, a database for the Gram-positive model bacterium Bacillus subtilis (http://subtiwiki.uni-goettingen.de/). In addition to the established companion modules of SubtiWiki, SubtiPathways and SubtInteract, we have now created SubtiExpress, a third module, to visualize genome scale transcription data that are of unprecedented quality and density. Today, SubtiWiki is one of the most complete collections of knowledge on a living organism in one single resource.</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gkt1002</identifier><identifier>PMID: 24178028</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Bacillus subtilis - genetics ; Bacillus subtilis - metabolism ; Bacillus subtilis - physiology ; Bacterial Proteins - metabolism ; Databases, Genetic ; Gene Expression ; Gene Expression Profiling ; Genes, Bacterial ; Genes, Essential ; Genome, Bacterial ; Internet ; IV. Viruses, bacteria, protozoa and fungi ; Metabolic Networks and Pathways ; Models, Biological ; Protein Interaction Maps ; RNA, Bacterial - metabolism ; Spores, Bacterial - genetics</subject><ispartof>Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D692-D698</ispartof><rights>The Author(s) 2013. Published by Oxford University Press. 2013</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965029/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965029/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24178028$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Michna, Raphael H</creatorcontrib><creatorcontrib>Commichau, Fabian M</creatorcontrib><creatorcontrib>Tödter, Dominik</creatorcontrib><creatorcontrib>Zschiedrich, Christopher P</creatorcontrib><creatorcontrib>Stülke, Jörg</creatorcontrib><title>SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information</title><title>Nucleic acids research</title><addtitle>Nucleic Acids Res</addtitle><description>Genome annotation and access to information from large-scale experimental approaches at the genome level are essential to improve our understanding of living cells and organisms. This is even more the case for model organisms that are the basis to study pathogens and technologically important species. We have generated SubtiWiki, a database for the Gram-positive model bacterium Bacillus subtilis (http://subtiwiki.uni-goettingen.de/). In addition to the established companion modules of SubtiWiki, SubtiPathways and SubtInteract, we have now created SubtiExpress, a third module, to visualize genome scale transcription data that are of unprecedented quality and density. Today, SubtiWiki is one of the most complete collections of knowledge on a living organism in one single resource.</description><subject>Bacillus subtilis - genetics</subject><subject>Bacillus subtilis - metabolism</subject><subject>Bacillus subtilis - physiology</subject><subject>Bacterial Proteins - metabolism</subject><subject>Databases, Genetic</subject><subject>Gene Expression</subject><subject>Gene Expression Profiling</subject><subject>Genes, Bacterial</subject><subject>Genes, Essential</subject><subject>Genome, Bacterial</subject><subject>Internet</subject><subject>IV. Viruses, bacteria, protozoa and fungi</subject><subject>Metabolic Networks and Pathways</subject><subject>Models, Biological</subject><subject>Protein Interaction Maps</subject><subject>RNA, Bacterial - metabolism</subject><subject>Spores, Bacterial - genetics</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><recordid>eNpVkM1v1DAQxS1ERZfCiTvykQOh4494kwsSrfiSKnEAxDGa2JNds44TbIe2_z1ZUVB7Go3em9_TG8ZeCHgjoFXnEdP57lAEgHzENkIZWenWyMdsAwrqSoBuTtnTnH8CCC1q_YSdSi22Dchmw26-Ln3xP_zBV8gdFuwxEx-mxMue-Dg5CnxKO4w-j_wCrQ9hyTwfj4LPqwkLDz4eMp-x7K_x9jX3sVBCW_wUOUbH6WZOlPNx9XElj3iUnrGTAUOm53fzjH3_8P7b5afq6svHz5fvrqpZGlMq5XrS7doJJNiGnDOib61ryVhhhl7ClrTTujeaahiMA1vbbS9c74ZGW3LqjL39y52XfiRnKZaEoZuTHzHddhP67qES_b7bTb871ZoaZLsCXt0B0vRroVy60WdLIWCkacmd0C1sawWgVuvL-1n_Q_69W_0BulqG3A</recordid><startdate>20140101</startdate><enddate>20140101</enddate><creator>Michna, Raphael H</creator><creator>Commichau, Fabian M</creator><creator>Tödter, Dominik</creator><creator>Zschiedrich, Christopher P</creator><creator>Stülke, Jörg</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20140101</creationdate><title>SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information</title><author>Michna, Raphael H ; Commichau, Fabian M ; Tödter, Dominik ; Zschiedrich, Christopher P ; Stülke, Jörg</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p266t-3dbe49362020c8edd61b9cd9e6c16fb207e4d44b64e50f6d0c5c7b1dbdf84ced3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Bacillus subtilis - genetics</topic><topic>Bacillus subtilis - metabolism</topic><topic>Bacillus subtilis - physiology</topic><topic>Bacterial Proteins - metabolism</topic><topic>Databases, Genetic</topic><topic>Gene Expression</topic><topic>Gene Expression Profiling</topic><topic>Genes, Bacterial</topic><topic>Genes, Essential</topic><topic>Genome, Bacterial</topic><topic>Internet</topic><topic>IV. Viruses, bacteria, protozoa and fungi</topic><topic>Metabolic Networks and Pathways</topic><topic>Models, Biological</topic><topic>Protein Interaction Maps</topic><topic>RNA, Bacterial - metabolism</topic><topic>Spores, Bacterial - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Michna, Raphael H</creatorcontrib><creatorcontrib>Commichau, Fabian M</creatorcontrib><creatorcontrib>Tödter, Dominik</creatorcontrib><creatorcontrib>Zschiedrich, Christopher P</creatorcontrib><creatorcontrib>Stülke, Jörg</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Michna, Raphael H</au><au>Commichau, Fabian M</au><au>Tödter, Dominik</au><au>Zschiedrich, Christopher P</au><au>Stülke, Jörg</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2014-01-01</date><risdate>2014</risdate><volume>42</volume><issue>Database issue</issue><spage>D692</spage><epage>D698</epage><pages>D692-D698</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><abstract>Genome annotation and access to information from large-scale experimental approaches at the genome level are essential to improve our understanding of living cells and organisms. This is even more the case for model organisms that are the basis to study pathogens and technologically important species. We have generated SubtiWiki, a database for the Gram-positive model bacterium Bacillus subtilis (http://subtiwiki.uni-goettingen.de/). In addition to the established companion modules of SubtiWiki, SubtiPathways and SubtInteract, we have now created SubtiExpress, a third module, to visualize genome scale transcription data that are of unprecedented quality and density. Today, SubtiWiki is one of the most complete collections of knowledge on a living organism in one single resource.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>24178028</pmid><doi>10.1093/nar/gkt1002</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0305-1048
ispartof Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D692-D698
issn 0305-1048
1362-4962
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3965029
source PubMed Central; Oxford Open Access Journals
subjects Bacillus subtilis - genetics
Bacillus subtilis - metabolism
Bacillus subtilis - physiology
Bacterial Proteins - metabolism
Databases, Genetic
Gene Expression
Gene Expression Profiling
Genes, Bacterial
Genes, Essential
Genome, Bacterial
Internet
IV. Viruses, bacteria, protozoa and fungi
Metabolic Networks and Pathways
Models, Biological
Protein Interaction Maps
RNA, Bacterial - metabolism
Spores, Bacterial - genetics
title SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-04T21%3A17%3A46IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=SubtiWiki-a%20database%20for%20the%20model%20organism%20Bacillus%20subtilis%20that%20links%20pathway,%20interaction%20and%20expression%20information&rft.jtitle=Nucleic%20acids%20research&rft.au=Michna,%20Raphael%20H&rft.date=2014-01-01&rft.volume=42&rft.issue=Database%20issue&rft.spage=D692&rft.epage=D698&rft.pages=D692-D698&rft.issn=0305-1048&rft.eissn=1362-4962&rft_id=info:doi/10.1093/nar/gkt1002&rft_dat=%3Cproquest_pubme%3E1490753003%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-p266t-3dbe49362020c8edd61b9cd9e6c16fb207e4d44b64e50f6d0c5c7b1dbdf84ced3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1490753003&rft_id=info:pmid/24178028&rfr_iscdi=true