Discovery of a novel small secreted protein family with conserved N-terminal IGY motif in Dikarya fungi

• Published in: BMC genomics 2014-12, Vol.15 (1), p.1151-1151
• Main Authors: Cheng, Qiang, Wang, Haoran, Xu, Bin, Zhu, Sheng, Hu, Lanxi, Huang, Minren
• Format: Article
• Language: English
• Subjects: Amino Acid Motifs; Amino Acid Sequence; Amino acids; Ascomycota - cytology; Ascomycota - genetics; Ascomycota - metabolism; Ascomycota - physiology; Cell death; Conserved Sequence; Fungal Proteins - chemistry; Fungal Proteins - genetics; Fungal Proteins - metabolism; Fungi; Gene Expression Regulation, Fungal; Genes; Genetic aspects; Genome, Fungal - genetics; Genomes; Genomics; Molecular Sequence Data; Phylogeny; Physiological aspects; Proteins; Sequence Homology, Amino Acid; Species Specificity; Studies; Symbiosis
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/1471-2164-15-1151

Small secreted proteins (SSPs) are employed by plant pathogenic fungi as essential strategic tools for their successful colonization. SSPs are often species-specific and so far only a few widely phylogenetically distributed SSPs have been identified. A novel fungal SSP family consisting of 107 members was identified in the poplar tree fungal pathogen Marssonina brunnea, which accounts for over 17% of its secretome. We named these proteins IGY proteins (IGYPs) based on the conserved three amino acids at the N-terminus. In spite of overall low sequence similarity among IGYPs; they showed conserved N- and C-terminal motifs and a unified gene structure. By RT-PCR-seq, we analyzed the IGYP gene models and validated their expressions as active genes during infection. IGYP homologues were also found in 25 other Dikarya fungal species, all of which shared conserved motifs and the same gene structure. Furthermore, 18 IGYPs from 11 fungi also shared similar genomic contexts. Real-time RT-PCR showed that 8 MbIGYPs were highly expressed in the biotrophic stage. Interestingly, transient assay of 12 MbIGYPs showed that the MbIGYP13 protein induced cell death in resistant poplar clones. In total, 154 IGYPs in 26 fungi of the Dikarya subkingdom were discovered. Gene structure and genomic context analyses indicated that IGYPs originated from a common ancestor. In M. brunnea, the expansion of highly divergent MbIGYPs possibly is associated with plant-pathogen arms race.