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First‐generation annotations for the fathead minnow (Pimephales promelas) genome

Ab initio gene prediction and evidence alignment were used to produce the first annotations for the fathead minnow (Pimephales promelas) genome. We also describe a genome browser, hosted by the Society of Environmental Toxicology and Chemistry, that provides simplified access to the annotation data...

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Bibliographic Details
Published in:Environmental toxicology and chemistry 2017-12, Vol.36 (12), p.3436-3442
Main Authors: Saari, Travis W., Schroeder, Anthony L., Ankley, Gerald T., Villeneuve, Daniel L.
Format: Article
Language:English
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Summary:Ab initio gene prediction and evidence alignment were used to produce the first annotations for the fathead minnow (Pimephales promelas) genome. We also describe a genome browser, hosted by the Society of Environmental Toxicology and Chemistry, that provides simplified access to the annotation data in context with the genomic sequence. The present study extends the utility of the fathead minnow genome and supports the continued development of this species as a model organism for predictive toxicology. Environ Toxicol Chem 2017;36:3436–3442. Published 2017 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.
ISSN:0730-7268
1552-8618
DOI:10.1002/etc.3929