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HLA-A, HLA-B, and HLA-DRB1 Allele and Haplotype Frequencies in Renal Transplant Candidates in a Population in Southern Brazil
Background Very few studies have examined the diversity of human leukocyte antigens (HLA) in the Brazilian renal transplant candidates. Methods The frequencies of the HLA‐A, HLA‐B, and HLA‐DRB1 alleles, haplotypes and phenotypes were studied in 522 patients with chronic renal failure, renal transpla...
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Published in: | Journal of clinical laboratory analysis 2016-05, Vol.30 (3), p.258-265 |
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container_title | Journal of clinical laboratory analysis |
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creator | Saito, Patrícia Keiko Yamakawa, Roger Haruki Noguti, Erika Noda Bedendo, Gustavo Borelli Júnior, Waldir Veríssimo da Silva Yamada, Sérgio Seiji Borelli, Sueli Donizete |
description | Background
Very few studies have examined the diversity of human leukocyte antigens (HLA) in the Brazilian renal transplant candidates.
Methods
The frequencies of the HLA‐A, HLA‐B, and HLA‐DRB1 alleles, haplotypes and phenotypes were studied in 522 patients with chronic renal failure, renal transplant candidates, registered at the Transplant Centers in north/northwestern Paraná State, southern Brazil. Patients were classified according to the ethnic group (319 whites [Caucasians], 134 mestizos [mixed race descendants of Europeans, Africans, and Amerindians; browns or “pardos”] and 69 blacks). The HLA typing was performed by the polymerase chain reaction sequence‐specific oligonucleotide method (PCR‐SSO), combined with Luminex technology.
Results
In the analysis of the total samples, 20 HLA‐A, 32 HLA‐B, and 13 HLA‐DRB1 allele groups were identified. The most frequent allele groups for each HLA locus were HLA‐A*02 (25.4%), HLA‐B*44 (10.9%), and HLA‐DRB1*13 (13.9%). The most frequent haplotypes were HLA‐A*01‐B*08‐DRB1*03 (2.3%), A*02‐B*44‐DRB1*07 (1.2%), and A*03‐B*07‐DRB1*11 (1.0%). Significant differences (P < 0.05) were observed in the HLA‐A*68, B*08, and B*58 allele frequencies among ethnic groups.
Conclusions
This study provides the first data on the HLA‐A, HLA‐B, and HLA‐DRB1 allele, phenotype and haplotype frequencies of renal transplant candidates in a population in southern Brazil. |
doi_str_mv | 10.1002/jcla.21846 |
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fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_6807127</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1808710559</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5196-544a823154757ad754ca077567e055c8e697db0efdcf379a0105136191bd791f3</originalsourceid><addsrcrecordid>eNqFkk1vEzEQhi0Eomnhwg9Alrgg1C32ev2xF6RNSlpQVFAa4Gg5uw516tiLvQsEif-O020j4ACnsT3PvOOxXwCeYHSCEcpfrmurTnIsCnYPjDAqRZaLnN4HIyQEzwTC5AAcxrhGCIkSs4fgIKeCEpaTEfh5Pquy6hjuwvgYKtfcLE_nYwwra7XVw5lqre-2rYbToL_02tVGR2gcnGunLFwE5WJrlevgJOGmUd2QVvC9b3urOuPdbn_p--5KBwfHQf0w9hF4sFI26se38Qh8mL5eTM6z2buzN5NqltUUlyyjRaFETjAtOOWq4bSoFeKcMq4RpbXQrOTNEulVU68ILxXCiGLCcImXDS_xihyBV4Nu2y83uqm164Kysg1mo8JWemXknxlnruRn_1UygTjOeRJ4fisQfBo_dnJjYq1tGln7PkoskOCpKy3_j_Iy5xwLXCT02V_o2vchPehAEcJKRBL1YqDq4GMMerW_N0ZyZwC5M4C8MUCCn_4-6R69-_EE4AH4Zqze_kNKvp3MqjvRbKgxsdPf9zUqXEvGCafy08WZnC8upvOF-CgvyS_R58eA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1792336903</pqid></control><display><type>article</type><title>HLA-A, HLA-B, and HLA-DRB1 Allele and Haplotype Frequencies in Renal Transplant Candidates in a Population in Southern Brazil</title><source>PubMed Central</source><creator>Saito, Patrícia Keiko ; Yamakawa, Roger Haruki ; Noguti, Erika Noda ; Bedendo, Gustavo Borelli ; Júnior, Waldir Veríssimo da Silva ; Yamada, Sérgio Seiji ; Borelli, Sueli Donizete</creator><creatorcontrib>Saito, Patrícia Keiko ; Yamakawa, Roger Haruki ; Noguti, Erika Noda ; Bedendo, Gustavo Borelli ; Júnior, Waldir Veríssimo da Silva ; Yamada, Sérgio Seiji ; Borelli, Sueli Donizete</creatorcontrib><description>Background
Very few studies have examined the diversity of human leukocyte antigens (HLA) in the Brazilian renal transplant candidates.
Methods
The frequencies of the HLA‐A, HLA‐B, and HLA‐DRB1 alleles, haplotypes and phenotypes were studied in 522 patients with chronic renal failure, renal transplant candidates, registered at the Transplant Centers in north/northwestern Paraná State, southern Brazil. Patients were classified according to the ethnic group (319 whites [Caucasians], 134 mestizos [mixed race descendants of Europeans, Africans, and Amerindians; browns or “pardos”] and 69 blacks). The HLA typing was performed by the polymerase chain reaction sequence‐specific oligonucleotide method (PCR‐SSO), combined with Luminex technology.
Results
In the analysis of the total samples, 20 HLA‐A, 32 HLA‐B, and 13 HLA‐DRB1 allele groups were identified. The most frequent allele groups for each HLA locus were HLA‐A*02 (25.4%), HLA‐B*44 (10.9%), and HLA‐DRB1*13 (13.9%). The most frequent haplotypes were HLA‐A*01‐B*08‐DRB1*03 (2.3%), A*02‐B*44‐DRB1*07 (1.2%), and A*03‐B*07‐DRB1*11 (1.0%). Significant differences (P < 0.05) were observed in the HLA‐A*68, B*08, and B*58 allele frequencies among ethnic groups.
Conclusions
This study provides the first data on the HLA‐A, HLA‐B, and HLA‐DRB1 allele, phenotype and haplotype frequencies of renal transplant candidates in a population in southern Brazil.</description><identifier>ISSN: 0887-8013</identifier><identifier>EISSN: 1098-2825</identifier><identifier>DOI: 10.1002/jcla.21846</identifier><identifier>PMID: 25853623</identifier><language>eng</language><publisher>United States: Blackwell Publishing Ltd</publisher><subject>Alleles ; Antigens ; Brazil ; chronic ; Ethnic Groups - genetics ; Female ; Gene Frequency - genetics ; genetic ; Genotype & phenotype ; Haplotypes - genetics ; HLA antigens ; HLA-A Antigens - genetics ; HLA-B Antigens - genetics ; HLA-DRB1 Chains - genetics ; Humans ; kidney failure ; kidney failure, chronic ; Kidney Transplantation ; Kidneys ; Leukocytes ; major histocompatibility complex ; Male ; Phenotype ; polymorphism ; polymorphism, genetic ; Transplants & implants</subject><ispartof>Journal of clinical laboratory analysis, 2016-05, Vol.30 (3), p.258-265</ispartof><rights>2015 Wiley Periodicals, Inc.</rights><rights>Copyright © 2016 Wiley Periodicals, Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5196-544a823154757ad754ca077567e055c8e697db0efdcf379a0105136191bd791f3</citedby><cites>FETCH-LOGICAL-c5196-544a823154757ad754ca077567e055c8e697db0efdcf379a0105136191bd791f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6807127/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6807127/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25853623$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Saito, Patrícia Keiko</creatorcontrib><creatorcontrib>Yamakawa, Roger Haruki</creatorcontrib><creatorcontrib>Noguti, Erika Noda</creatorcontrib><creatorcontrib>Bedendo, Gustavo Borelli</creatorcontrib><creatorcontrib>Júnior, Waldir Veríssimo da Silva</creatorcontrib><creatorcontrib>Yamada, Sérgio Seiji</creatorcontrib><creatorcontrib>Borelli, Sueli Donizete</creatorcontrib><title>HLA-A, HLA-B, and HLA-DRB1 Allele and Haplotype Frequencies in Renal Transplant Candidates in a Population in Southern Brazil</title><title>Journal of clinical laboratory analysis</title><addtitle>J. Clin. Lab. Anal</addtitle><description>Background
Very few studies have examined the diversity of human leukocyte antigens (HLA) in the Brazilian renal transplant candidates.
Methods
The frequencies of the HLA‐A, HLA‐B, and HLA‐DRB1 alleles, haplotypes and phenotypes were studied in 522 patients with chronic renal failure, renal transplant candidates, registered at the Transplant Centers in north/northwestern Paraná State, southern Brazil. Patients were classified according to the ethnic group (319 whites [Caucasians], 134 mestizos [mixed race descendants of Europeans, Africans, and Amerindians; browns or “pardos”] and 69 blacks). The HLA typing was performed by the polymerase chain reaction sequence‐specific oligonucleotide method (PCR‐SSO), combined with Luminex technology.
Results
In the analysis of the total samples, 20 HLA‐A, 32 HLA‐B, and 13 HLA‐DRB1 allele groups were identified. The most frequent allele groups for each HLA locus were HLA‐A*02 (25.4%), HLA‐B*44 (10.9%), and HLA‐DRB1*13 (13.9%). The most frequent haplotypes were HLA‐A*01‐B*08‐DRB1*03 (2.3%), A*02‐B*44‐DRB1*07 (1.2%), and A*03‐B*07‐DRB1*11 (1.0%). Significant differences (P < 0.05) were observed in the HLA‐A*68, B*08, and B*58 allele frequencies among ethnic groups.
Conclusions
This study provides the first data on the HLA‐A, HLA‐B, and HLA‐DRB1 allele, phenotype and haplotype frequencies of renal transplant candidates in a population in southern Brazil.</description><subject>Alleles</subject><subject>Antigens</subject><subject>Brazil</subject><subject>chronic</subject><subject>Ethnic Groups - genetics</subject><subject>Female</subject><subject>Gene Frequency - genetics</subject><subject>genetic</subject><subject>Genotype & phenotype</subject><subject>Haplotypes - genetics</subject><subject>HLA antigens</subject><subject>HLA-A Antigens - genetics</subject><subject>HLA-B Antigens - genetics</subject><subject>HLA-DRB1 Chains - genetics</subject><subject>Humans</subject><subject>kidney failure</subject><subject>kidney failure, chronic</subject><subject>Kidney Transplantation</subject><subject>Kidneys</subject><subject>Leukocytes</subject><subject>major histocompatibility complex</subject><subject>Male</subject><subject>Phenotype</subject><subject>polymorphism</subject><subject>polymorphism, genetic</subject><subject>Transplants & implants</subject><issn>0887-8013</issn><issn>1098-2825</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><recordid>eNqFkk1vEzEQhi0Eomnhwg9Alrgg1C32ev2xF6RNSlpQVFAa4Gg5uw516tiLvQsEif-O020j4ACnsT3PvOOxXwCeYHSCEcpfrmurTnIsCnYPjDAqRZaLnN4HIyQEzwTC5AAcxrhGCIkSs4fgIKeCEpaTEfh5Pquy6hjuwvgYKtfcLE_nYwwra7XVw5lqre-2rYbToL_02tVGR2gcnGunLFwE5WJrlevgJOGmUd2QVvC9b3urOuPdbn_p--5KBwfHQf0w9hF4sFI26se38Qh8mL5eTM6z2buzN5NqltUUlyyjRaFETjAtOOWq4bSoFeKcMq4RpbXQrOTNEulVU68ILxXCiGLCcImXDS_xihyBV4Nu2y83uqm164Kysg1mo8JWemXknxlnruRn_1UygTjOeRJ4fisQfBo_dnJjYq1tGln7PkoskOCpKy3_j_Iy5xwLXCT02V_o2vchPehAEcJKRBL1YqDq4GMMerW_N0ZyZwC5M4C8MUCCn_4-6R69-_EE4AH4Zqze_kNKvp3MqjvRbKgxsdPf9zUqXEvGCafy08WZnC8upvOF-CgvyS_R58eA</recordid><startdate>201605</startdate><enddate>201605</enddate><creator>Saito, Patrícia Keiko</creator><creator>Yamakawa, Roger Haruki</creator><creator>Noguti, Erika Noda</creator><creator>Bedendo, Gustavo Borelli</creator><creator>Júnior, Waldir Veríssimo da Silva</creator><creator>Yamada, Sérgio Seiji</creator><creator>Borelli, Sueli Donizete</creator><general>Blackwell Publishing Ltd</general><general>John Wiley & Sons, Inc</general><general>John Wiley and Sons Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7T5</scope><scope>7U9</scope><scope>H94</scope><scope>K9.</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>201605</creationdate><title>HLA-A, HLA-B, and HLA-DRB1 Allele and Haplotype Frequencies in Renal Transplant Candidates in a Population in Southern Brazil</title><author>Saito, Patrícia Keiko ; Yamakawa, Roger Haruki ; Noguti, Erika Noda ; Bedendo, Gustavo Borelli ; Júnior, Waldir Veríssimo da Silva ; Yamada, Sérgio Seiji ; Borelli, Sueli Donizete</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5196-544a823154757ad754ca077567e055c8e697db0efdcf379a0105136191bd791f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Alleles</topic><topic>Antigens</topic><topic>Brazil</topic><topic>chronic</topic><topic>Ethnic Groups - genetics</topic><topic>Female</topic><topic>Gene Frequency - genetics</topic><topic>genetic</topic><topic>Genotype & phenotype</topic><topic>Haplotypes - genetics</topic><topic>HLA antigens</topic><topic>HLA-A Antigens - genetics</topic><topic>HLA-B Antigens - genetics</topic><topic>HLA-DRB1 Chains - genetics</topic><topic>Humans</topic><topic>kidney failure</topic><topic>kidney failure, chronic</topic><topic>Kidney Transplantation</topic><topic>Kidneys</topic><topic>Leukocytes</topic><topic>major histocompatibility complex</topic><topic>Male</topic><topic>Phenotype</topic><topic>polymorphism</topic><topic>polymorphism, genetic</topic><topic>Transplants & implants</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Saito, Patrícia Keiko</creatorcontrib><creatorcontrib>Yamakawa, Roger Haruki</creatorcontrib><creatorcontrib>Noguti, Erika Noda</creatorcontrib><creatorcontrib>Bedendo, Gustavo Borelli</creatorcontrib><creatorcontrib>Júnior, Waldir Veríssimo da Silva</creatorcontrib><creatorcontrib>Yamada, Sérgio Seiji</creatorcontrib><creatorcontrib>Borelli, Sueli Donizete</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Immunology Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of clinical laboratory analysis</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Saito, Patrícia Keiko</au><au>Yamakawa, Roger Haruki</au><au>Noguti, Erika Noda</au><au>Bedendo, Gustavo Borelli</au><au>Júnior, Waldir Veríssimo da Silva</au><au>Yamada, Sérgio Seiji</au><au>Borelli, Sueli Donizete</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>HLA-A, HLA-B, and HLA-DRB1 Allele and Haplotype Frequencies in Renal Transplant Candidates in a Population in Southern Brazil</atitle><jtitle>Journal of clinical laboratory analysis</jtitle><addtitle>J. Clin. Lab. Anal</addtitle><date>2016-05</date><risdate>2016</risdate><volume>30</volume><issue>3</issue><spage>258</spage><epage>265</epage><pages>258-265</pages><issn>0887-8013</issn><eissn>1098-2825</eissn><abstract>Background
Very few studies have examined the diversity of human leukocyte antigens (HLA) in the Brazilian renal transplant candidates.
Methods
The frequencies of the HLA‐A, HLA‐B, and HLA‐DRB1 alleles, haplotypes and phenotypes were studied in 522 patients with chronic renal failure, renal transplant candidates, registered at the Transplant Centers in north/northwestern Paraná State, southern Brazil. Patients were classified according to the ethnic group (319 whites [Caucasians], 134 mestizos [mixed race descendants of Europeans, Africans, and Amerindians; browns or “pardos”] and 69 blacks). The HLA typing was performed by the polymerase chain reaction sequence‐specific oligonucleotide method (PCR‐SSO), combined with Luminex technology.
Results
In the analysis of the total samples, 20 HLA‐A, 32 HLA‐B, and 13 HLA‐DRB1 allele groups were identified. The most frequent allele groups for each HLA locus were HLA‐A*02 (25.4%), HLA‐B*44 (10.9%), and HLA‐DRB1*13 (13.9%). The most frequent haplotypes were HLA‐A*01‐B*08‐DRB1*03 (2.3%), A*02‐B*44‐DRB1*07 (1.2%), and A*03‐B*07‐DRB1*11 (1.0%). Significant differences (P < 0.05) were observed in the HLA‐A*68, B*08, and B*58 allele frequencies among ethnic groups.
Conclusions
This study provides the first data on the HLA‐A, HLA‐B, and HLA‐DRB1 allele, phenotype and haplotype frequencies of renal transplant candidates in a population in southern Brazil.</abstract><cop>United States</cop><pub>Blackwell Publishing Ltd</pub><pmid>25853623</pmid><doi>10.1002/jcla.21846</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Alleles Antigens Brazil chronic Ethnic Groups - genetics Female Gene Frequency - genetics genetic Genotype & phenotype Haplotypes - genetics HLA antigens HLA-A Antigens - genetics HLA-B Antigens - genetics HLA-DRB1 Chains - genetics Humans kidney failure kidney failure, chronic Kidney Transplantation Kidneys Leukocytes major histocompatibility complex Male Phenotype polymorphism polymorphism, genetic Transplants & implants |
title | HLA-A, HLA-B, and HLA-DRB1 Allele and Haplotype Frequencies in Renal Transplant Candidates in a Population in Southern Brazil |
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