ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data

ViroMatch is an automated pipeline that takes metagenomic sequencing reads as input and performs iterative nucleotide and translated nucleotide mapping to identify viral sequences. We provide a Docker image for ViroMatch, so that users will not have to install dependencies.

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Bibliographic Details
Published in:Microbiology resource announcements 2021-03, Vol.10 (9)
Main Authors: Wylie, Todd N, Wylie, Kristine M
Format: Article
Language:English
Subjects:
Databases and Software
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Description
Summary:ViroMatch is an automated pipeline that takes metagenomic sequencing reads as input and performs iterative nucleotide and translated nucleotide mapping to identify viral sequences. We provide a Docker image for ViroMatch, so that users will not have to install dependencies.
ISSN:2576-098X
2576-098X
DOI:10.1128/mra.01468-20