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Analysis of the Gut Microbiota: An Emerging Source of Biomarkers for Immune Checkpoint Blockade Therapy in Non-Small Cell Lung Cancer
Background: The human gut harbors around 1013–1014 microorganisms, collectively referred to as gut microbiota. Recent studies have found that the gut microbiota may have an impact on the interaction between immune regulation and anti-cancer immunotherapies. Methods: In order to characterize the dive...
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Published in: | Cancers 2021-05, Vol.13 (11), p.2514 |
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creator | Zhang, Feiyu Ferrero, Macarena Dong, Ning D’Auria, Giuseppe Reyes-Prieto, Mariana Herreros-Pomares, Alejandro Calabuig-Fariñas, Silvia Duréndez, Elena Aparisi, Francisco Blasco, Ana García, Clara Camps, Carlos Jantus-Lewintre, Eloisa Sirera, Rafael |
description | Background: The human gut harbors around 1013–1014 microorganisms, collectively referred to as gut microbiota. Recent studies have found that the gut microbiota may have an impact on the interaction between immune regulation and anti-cancer immunotherapies. Methods: In order to characterize the diversity and composition of commensal microbiota and its relationship with response to immune checkpoint blockade (ICB), 16S ribosomal DNA (rDNA) sequencing was performed on 69 stool samples from advanced non-small cell lung cancer (NSCLC) patients prior to treatment with ICB. Results: The use of antibiotics and ICB-related skin toxicity were significantly associated with reduced gut microbiota diversity. However, antibiotics (ATB) usage was not related to low ICB efficacy. Phascolarctobacterium was enriched in patients with clinical benefit and correlated with prolonged progression-free survival, whereas Dialister was more represented in patients with progressive disease, and its higher relative abundance was associated with reduced progression-free survival and overall survival, with independent prognostic value in multivariate analysis. Conclusions: Our results corroborate the relation between the baseline gut microbiota composition and ICB clinical outcomes in advanced NSCLC patients, and provide novel potential predictive and prognostic biomarkers for immunotherapy in NSCLC. |
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Recent studies have found that the gut microbiota may have an impact on the interaction between immune regulation and anti-cancer immunotherapies. Methods: In order to characterize the diversity and composition of commensal microbiota and its relationship with response to immune checkpoint blockade (ICB), 16S ribosomal DNA (rDNA) sequencing was performed on 69 stool samples from advanced non-small cell lung cancer (NSCLC) patients prior to treatment with ICB. Results: The use of antibiotics and ICB-related skin toxicity were significantly associated with reduced gut microbiota diversity. However, antibiotics (ATB) usage was not related to low ICB efficacy. Phascolarctobacterium was enriched in patients with clinical benefit and correlated with prolonged progression-free survival, whereas Dialister was more represented in patients with progressive disease, and its higher relative abundance was associated with reduced progression-free survival and overall survival, with independent prognostic value in multivariate analysis. Conclusions: Our results corroborate the relation between the baseline gut microbiota composition and ICB clinical outcomes in advanced NSCLC patients, and provide novel potential predictive and prognostic biomarkers for immunotherapy in NSCLC.</description><identifier>ISSN: 2072-6694</identifier><identifier>EISSN: 2072-6694</identifier><identifier>DOI: 10.3390/cancers13112514</identifier><identifier>PMID: 34063829</identifier><language>eng</language><publisher>Basel: MDPI AG</publisher><subject>Antibiotics ; Biomarkers ; Cancer immunotherapy ; Clinical outcomes ; Consortia ; Dendritic cells ; Disease ; DNA sequencing ; Immune checkpoint ; Immunoregulation ; Immunotherapy ; Intestinal microflora ; Lung cancer ; Microbiota ; Microorganisms ; Multivariate analysis ; Mutation ; Non-small cell lung carcinoma ; Patients ; PD-1 protein ; PD-L1 protein ; Ribosomal DNA ; Small cell lung carcinoma ; Toxicity ; Tumors</subject><ispartof>Cancers, 2021-05, Vol.13 (11), p.2514</ispartof><rights>2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 by the authors. 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c398t-58f5c4b90ac1a2f3d6df7e0b723876eb10bcbade1ad5f876ac8578d78f0973933</citedby><cites>FETCH-LOGICAL-c398t-58f5c4b90ac1a2f3d6df7e0b723876eb10bcbade1ad5f876ac8578d78f0973933</cites><orcidid>0000-0002-7304-7796 ; 0000-0001-9470-9800 ; 0000-0003-0672-2541 ; 0000-0003-0188-5165 ; 0000-0001-7749-174X ; 0000-0001-6292-2420 ; 0000-0003-3838-097X ; 0000-0001-7395-4380 ; 0000-0003-4631-9378</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2539606697/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2539606697?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25752,27923,27924,37011,37012,44589,53790,53792,74897</link.rule.ids></links><search><creatorcontrib>Zhang, Feiyu</creatorcontrib><creatorcontrib>Ferrero, Macarena</creatorcontrib><creatorcontrib>Dong, Ning</creatorcontrib><creatorcontrib>D’Auria, Giuseppe</creatorcontrib><creatorcontrib>Reyes-Prieto, Mariana</creatorcontrib><creatorcontrib>Herreros-Pomares, Alejandro</creatorcontrib><creatorcontrib>Calabuig-Fariñas, Silvia</creatorcontrib><creatorcontrib>Duréndez, Elena</creatorcontrib><creatorcontrib>Aparisi, Francisco</creatorcontrib><creatorcontrib>Blasco, Ana</creatorcontrib><creatorcontrib>García, Clara</creatorcontrib><creatorcontrib>Camps, Carlos</creatorcontrib><creatorcontrib>Jantus-Lewintre, Eloisa</creatorcontrib><creatorcontrib>Sirera, Rafael</creatorcontrib><title>Analysis of the Gut Microbiota: An Emerging Source of Biomarkers for Immune Checkpoint Blockade Therapy in Non-Small Cell Lung Cancer</title><title>Cancers</title><description>Background: The human gut harbors around 1013–1014 microorganisms, collectively referred to as gut microbiota. Recent studies have found that the gut microbiota may have an impact on the interaction between immune regulation and anti-cancer immunotherapies. Methods: In order to characterize the diversity and composition of commensal microbiota and its relationship with response to immune checkpoint blockade (ICB), 16S ribosomal DNA (rDNA) sequencing was performed on 69 stool samples from advanced non-small cell lung cancer (NSCLC) patients prior to treatment with ICB. Results: The use of antibiotics and ICB-related skin toxicity were significantly associated with reduced gut microbiota diversity. However, antibiotics (ATB) usage was not related to low ICB efficacy. Phascolarctobacterium was enriched in patients with clinical benefit and correlated with prolonged progression-free survival, whereas Dialister was more represented in patients with progressive disease, and its higher relative abundance was associated with reduced progression-free survival and overall survival, with independent prognostic value in multivariate analysis. Conclusions: Our results corroborate the relation between the baseline gut microbiota composition and ICB clinical outcomes in advanced NSCLC patients, and provide novel potential predictive and prognostic biomarkers for immunotherapy in NSCLC.</description><subject>Antibiotics</subject><subject>Biomarkers</subject><subject>Cancer immunotherapy</subject><subject>Clinical outcomes</subject><subject>Consortia</subject><subject>Dendritic cells</subject><subject>Disease</subject><subject>DNA sequencing</subject><subject>Immune checkpoint</subject><subject>Immunoregulation</subject><subject>Immunotherapy</subject><subject>Intestinal microflora</subject><subject>Lung cancer</subject><subject>Microbiota</subject><subject>Microorganisms</subject><subject>Multivariate analysis</subject><subject>Mutation</subject><subject>Non-small cell lung carcinoma</subject><subject>Patients</subject><subject>PD-1 protein</subject><subject>PD-L1 protein</subject><subject>Ribosomal DNA</subject><subject>Small cell lung carcinoma</subject><subject>Toxicity</subject><subject>Tumors</subject><issn>2072-6694</issn><issn>2072-6694</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNpdkUtv1DAUhS0EotXQNVtLbNiE2nHiBwukaVRKpQEWLWvLca5n3EnswU6Q5gfwv3EfQlAv7Cv707k-5yL0lpIPjClybk2wkDJllNYtbV6g05qIuuJcNS__qU_QWc53pCzGqODiNTphDeFM1uoU_V4HMx6zzzg6PO8AXy0z_uptir2Ps_mI1wFfTpC2PmzxTVyShXvywsfJpH3pjl1M-HqalgC424HdH6IPM74Yo92bAfDtDpI5HLEP-FsM1c1kxhF3ULbNUiS7Bw9v0CtnxgxnT-cK_fh8edt9qTbfr6679aayTMm5aqVrbdMrYiw1tWMDH5wA0ouaScGhp6S3fWlKzdC6cmOsbIUchHRECaYYW6FPj7qHpZ9gsBDmZEZ9SL64OepovP7_Jfid3sZfWlLFeVFYofdPAin-XCDPevLZFjcmQFyyrlvGG0lKzAV99wy9K_GVtB8oxUmZjSjU-SNVEs85gfv7GUr0_ZT1symzP_SBm7w</recordid><startdate>20210521</startdate><enddate>20210521</enddate><creator>Zhang, Feiyu</creator><creator>Ferrero, Macarena</creator><creator>Dong, Ning</creator><creator>D’Auria, Giuseppe</creator><creator>Reyes-Prieto, Mariana</creator><creator>Herreros-Pomares, Alejandro</creator><creator>Calabuig-Fariñas, Silvia</creator><creator>Duréndez, Elena</creator><creator>Aparisi, Francisco</creator><creator>Blasco, Ana</creator><creator>García, Clara</creator><creator>Camps, Carlos</creator><creator>Jantus-Lewintre, Eloisa</creator><creator>Sirera, Rafael</creator><general>MDPI AG</general><general>MDPI</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7T5</scope><scope>7TO</scope><scope>7XB</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-7304-7796</orcidid><orcidid>https://orcid.org/0000-0001-9470-9800</orcidid><orcidid>https://orcid.org/0000-0003-0672-2541</orcidid><orcidid>https://orcid.org/0000-0003-0188-5165</orcidid><orcidid>https://orcid.org/0000-0001-7749-174X</orcidid><orcidid>https://orcid.org/0000-0001-6292-2420</orcidid><orcidid>https://orcid.org/0000-0003-3838-097X</orcidid><orcidid>https://orcid.org/0000-0001-7395-4380</orcidid><orcidid>https://orcid.org/0000-0003-4631-9378</orcidid></search><sort><creationdate>20210521</creationdate><title>Analysis of the Gut Microbiota: An Emerging Source of Biomarkers for Immune Checkpoint Blockade Therapy in Non-Small Cell Lung Cancer</title><author>Zhang, Feiyu ; Ferrero, Macarena ; Dong, Ning ; D’Auria, Giuseppe ; Reyes-Prieto, Mariana ; Herreros-Pomares, Alejandro ; Calabuig-Fariñas, Silvia ; Duréndez, Elena ; Aparisi, Francisco ; Blasco, Ana ; García, Clara ; Camps, Carlos ; Jantus-Lewintre, Eloisa ; Sirera, Rafael</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c398t-58f5c4b90ac1a2f3d6df7e0b723876eb10bcbade1ad5f876ac8578d78f0973933</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Antibiotics</topic><topic>Biomarkers</topic><topic>Cancer immunotherapy</topic><topic>Clinical outcomes</topic><topic>Consortia</topic><topic>Dendritic cells</topic><topic>Disease</topic><topic>DNA sequencing</topic><topic>Immune checkpoint</topic><topic>Immunoregulation</topic><topic>Immunotherapy</topic><topic>Intestinal microflora</topic><topic>Lung cancer</topic><topic>Microbiota</topic><topic>Microorganisms</topic><topic>Multivariate analysis</topic><topic>Mutation</topic><topic>Non-small cell lung carcinoma</topic><topic>Patients</topic><topic>PD-1 protein</topic><topic>PD-L1 protein</topic><topic>Ribosomal DNA</topic><topic>Small cell lung carcinoma</topic><topic>Toxicity</topic><topic>Tumors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Feiyu</creatorcontrib><creatorcontrib>Ferrero, Macarena</creatorcontrib><creatorcontrib>Dong, Ning</creatorcontrib><creatorcontrib>D’Auria, Giuseppe</creatorcontrib><creatorcontrib>Reyes-Prieto, Mariana</creatorcontrib><creatorcontrib>Herreros-Pomares, Alejandro</creatorcontrib><creatorcontrib>Calabuig-Fariñas, Silvia</creatorcontrib><creatorcontrib>Duréndez, Elena</creatorcontrib><creatorcontrib>Aparisi, Francisco</creatorcontrib><creatorcontrib>Blasco, Ana</creatorcontrib><creatorcontrib>García, Clara</creatorcontrib><creatorcontrib>Camps, Carlos</creatorcontrib><creatorcontrib>Jantus-Lewintre, Eloisa</creatorcontrib><creatorcontrib>Sirera, Rafael</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Immunology Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>ProQuest research library</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Publicly Available Content (ProQuest)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Cancers</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Feiyu</au><au>Ferrero, Macarena</au><au>Dong, Ning</au><au>D’Auria, Giuseppe</au><au>Reyes-Prieto, Mariana</au><au>Herreros-Pomares, Alejandro</au><au>Calabuig-Fariñas, Silvia</au><au>Duréndez, Elena</au><au>Aparisi, Francisco</au><au>Blasco, Ana</au><au>García, Clara</au><au>Camps, Carlos</au><au>Jantus-Lewintre, Eloisa</au><au>Sirera, Rafael</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Analysis of the Gut Microbiota: An Emerging Source of Biomarkers for Immune Checkpoint Blockade Therapy in Non-Small Cell Lung Cancer</atitle><jtitle>Cancers</jtitle><date>2021-05-21</date><risdate>2021</risdate><volume>13</volume><issue>11</issue><spage>2514</spage><pages>2514-</pages><issn>2072-6694</issn><eissn>2072-6694</eissn><abstract>Background: The human gut harbors around 1013–1014 microorganisms, collectively referred to as gut microbiota. Recent studies have found that the gut microbiota may have an impact on the interaction between immune regulation and anti-cancer immunotherapies. Methods: In order to characterize the diversity and composition of commensal microbiota and its relationship with response to immune checkpoint blockade (ICB), 16S ribosomal DNA (rDNA) sequencing was performed on 69 stool samples from advanced non-small cell lung cancer (NSCLC) patients prior to treatment with ICB. Results: The use of antibiotics and ICB-related skin toxicity were significantly associated with reduced gut microbiota diversity. However, antibiotics (ATB) usage was not related to low ICB efficacy. Phascolarctobacterium was enriched in patients with clinical benefit and correlated with prolonged progression-free survival, whereas Dialister was more represented in patients with progressive disease, and its higher relative abundance was associated with reduced progression-free survival and overall survival, with independent prognostic value in multivariate analysis. Conclusions: Our results corroborate the relation between the baseline gut microbiota composition and ICB clinical outcomes in advanced NSCLC patients, and provide novel potential predictive and prognostic biomarkers for immunotherapy in NSCLC.</abstract><cop>Basel</cop><pub>MDPI AG</pub><pmid>34063829</pmid><doi>10.3390/cancers13112514</doi><orcidid>https://orcid.org/0000-0002-7304-7796</orcidid><orcidid>https://orcid.org/0000-0001-9470-9800</orcidid><orcidid>https://orcid.org/0000-0003-0672-2541</orcidid><orcidid>https://orcid.org/0000-0003-0188-5165</orcidid><orcidid>https://orcid.org/0000-0001-7749-174X</orcidid><orcidid>https://orcid.org/0000-0001-6292-2420</orcidid><orcidid>https://orcid.org/0000-0003-3838-097X</orcidid><orcidid>https://orcid.org/0000-0001-7395-4380</orcidid><orcidid>https://orcid.org/0000-0003-4631-9378</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Antibiotics Biomarkers Cancer immunotherapy Clinical outcomes Consortia Dendritic cells Disease DNA sequencing Immune checkpoint Immunoregulation Immunotherapy Intestinal microflora Lung cancer Microbiota Microorganisms Multivariate analysis Mutation Non-small cell lung carcinoma Patients PD-1 protein PD-L1 protein Ribosomal DNA Small cell lung carcinoma Toxicity Tumors |
title | Analysis of the Gut Microbiota: An Emerging Source of Biomarkers for Immune Checkpoint Blockade Therapy in Non-Small Cell Lung Cancer |
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