Detection of candidate gene networks involved in resistance to Sclerotinia sclerotiorum in soybean

Quantitative trait locus (QTL) mapping often yields associations with dissimilar loci/genes as a consequence of diverse factors. One trait for which very limited agreement between mapping studies has been observed is resistance to white mold in soybean. To explore whether different approaches applie...

Full description

Saved in:
Bibliographic Details
Published in:Journal of applied genetics 2022-02, Vol.63 (1), p.1-14
Main Authors: Zhang, Yu, Wang, Yuexing, Zhou, Wanying, Zheng, Shimao, Ye, Runzhou
Format: Article
Language:English
Subjects:
Analysis
Animal Genetics and Genomics
Biomedical and Life Sciences
Cell walls
Chromosome 17
Chromosome 3
Chromosomes
Dishevelled protein
Encyclopedias
Epistasis
Gene mapping
Gene polymorphism
Genes
Genetic aspects
Genome-wide association studies
Genomes
Genomics
Haplotypes
Human Genetics
Kinases
Life Sciences
MAP kinase
Mapping
Microbial Genetics and Genomics
Nucleotides
Phenotypes
Plant Genetics and Genomics
Plant Genetics • Review
Polymorphism
Protein kinase
Proteins
Quantitative genetics
Quantitative trait loci
Sclerotinia sclerotiorum
Signal transduction
Single nucleotide polymorphisms
Single-nucleotide polymorphism
Soybean
Soybeans
White mold
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:Quantitative trait locus (QTL) mapping often yields associations with dissimilar loci/genes as a consequence of diverse factors. One trait for which very limited agreement between mapping studies has been observed is resistance to white mold in soybean. To explore whether different approaches applied to a single data set could lead to more consistent results, haplotype-trait association and epistasis interaction effects were explored as a complement to a more conventional marker-trait analysis. At least 10 genomic regions were significantly associated with Sclerotinia sclerotiorum resistance in soybean, which have not been previously reported. At a significance level of α  = 0.05, haplotype-trait association showed that the most prominent signal originated from a haplotype with 4-SNP (single nucleotide polymorphism) on chromosome 17, and single SNP-trait analysis located a nucleotide polymorphism at position rs34387780 on chromosome 3. All of the peak-SNPs ( p -value 
ISSN:1234-1983
2190-3883
DOI:10.1007/s13353-021-00654-z