Effects of Externally Applied Electric Fields on the Manipulation of Solvated-Chignolin Folding: Static- versus Alternating-Field Dichotomy at Play

• Published in: The journal of physical chemistry. B 2022-01, Vol.126 (2), p.376-386
• Main Authors: Wu, HaoLun, Ghaani, Mohammad Reza, Futera, Zdeněk, English, Niall J
• Format: Article
• Language: English
• Subjects: B: Biophysical and Biochemical Systems and Processes; Electricity; Molecular Dynamics Simulation; Oligopeptides - chemistry; Protein Folding
• ISSN: 1520-6106; 1520-5207
• DOI: 10.1021/acs.jpcb.1c06857

The interaction between a protein and external electric field (EF) can alter its structure and dynamical behavior, which has a potential impact on the biological function of proteins and cause uncertain health consequences. Conversely, the application of EFs of judiciously selected intensity and frequency can help to treat disease, and optimization of this requires a greater understanding of EF-induced effects underpinning basic protein biophysics. In the present study, chignolinan artificial protein sufficiently small to undergo fast-folding events and transitionswas selected as an ideal prototype to investigate how, and to what extent, externally applied electric fields may manipulate or influence protein-folding phenomena. Nonequilibrium molecular dynamics (NEMD) simulations have been performed of solvated chignolin to determine the distribution of folding states and their underlying transition dynamics, in the absence and presence of externally applied electric fields (both static and alternating); a key focus has been to ascertain how folding pathways are altered in an athermal sense by external fields. Compared to zero-field conditions, a dramatically differentindeed, bifurcatedbehavior of chignolin-folding processes emerges between static- and alternating-field scenarios, especially vis-à-vis incipient stages of hydrophobic-core formation: in alternating fields, fold-state populations diversified, with an attendant acceleration of state-hopping folding kinetics, featuring the concomitant emergence of a new, quasi-stable structure compared to the native structure, in field-shifted energy landscapes.