TSHVNet: Simultaneous Nuclear Instance Segmentation and Classification in Histopathological Images Based on Multiattention Mechanisms

• Published in: BioMed research international 2022, Vol.2022 (1), p.7921922
• Main Authors: Chen, Yuli, Jia, Yuhang, Zhang, Xinxin, Bai, Jiayang, Li, Xue, Ma, Miao, Sun, Zengguo, Pei, Zhao
• Format: Article
• Language: English
• Subjects: Cell Nucleus; Classification; Cluster Analysis; Clustering; Datasets; Deep learning; Diagnostic imaging; Electric Power Supplies; Histology, Pathological; Image classification; Image processing; Image segmentation; Instance segmentation; Machine learning; Medical imaging; Methods; Modules; Morphology; Neural networks; Neurons; Nuclei; Technology application; Transformers
• ISSN: 2314-6133; 2314-6141; 2314-6141
• DOI: 10.1155/2022/7921922

Accurate nuclear instance segmentation and classification in histopathologic images are the foundation of cancer diagnosis and prognosis. Several challenges are restricting the development of accurate simultaneous nuclear instance segmentation and classification. Firstly, the visual appearances of different category nuclei could be similar, making it difficult to distinguish different types of nuclei. Secondly, it is thorny to separate highly clustering nuclear instances. Thirdly, rare current studies have considered the global dependencies among diverse nuclear instances. In this article, we propose a novel deep learning framework named TSHVNet which integrates multiattention modules (i.e., Transformer and SimAM) into the state-of-the-art HoVer-Net for the sake of a more accurate nuclear instance segmentation and classification. Specifically, the Transformer attention module is employed on the trunk of the HoVer-Net to model the long-distance relationships of diverse nuclear instances. The SimAM attention modules are deployed on both the trunk and branches to apply the 3D channel and spatial attention to assign neurons with appropriate weights. Finally, we validate the proposed method on two public datasets: PanNuke and CoNSeP. The comparison results have shown the outstanding performance of the proposed TSHVNet network among the state-of-art methods. Particularly, as compared to the original HoVer-Net, the performance of nuclear instance segmentation evaluated by the PQ index has shown 1.4% and 2.8% increases on the CoNSeP and PanNuke datasets, respectively, and the performance of nuclear classification measured by F1_score has increased by 2.4% and 2.5% on the CoNSeP and PanNuke datasets, respectively. Therefore, the proposed multiattention-based TSHVNet is of great potential in simultaneous nuclear instance segmentation and classification.