Identifying a neuroanatomical signature of schizophrenia, reproducible across sites and stages, using machine learning with structured sparsity

• Published in: Acta psychiatrica Scandinavica 2018-12, Vol.138 (6), p.571-580
• Main Authors: Pierrefeu, A., Löfstedt, T., Laidi, C., Hadj‐Selem, F., Bourgin, J., Hajek, T., Spaniel, F., Kolenic, M., Ciuciu, P., Hamdani, N., Leboyer, M., Fovet, T., Jardri, R., Houenou, J., Duchesnay, E.
• Format: Article
• Language: English
• Subjects: Anatomy; Artificial Intelligence; Brain architecture; classification; Cognitive ability; Computer Science; Computerized Image Analysis; datoriserad bildanalys; first-episode psychosis; Human health and pathology; Learning algorithms; Life Sciences; Machine Learning; Magnetic resonance imaging; Medical Imaging; Mental disorders; Psychiatrics and mental health; Psychiatry; psychoradiology; Psychosis; psykiatri; Schizophrenia; Statistics; structural MRI
• ISSN: 0001-690X; 1600-0447; 1600-0447
• DOI: 10.1111/acps.12964

Objective Structural MRI (sMRI) increasingly offers insight into abnormalities inherent to schizophrenia. Previous machine learning applications suggest that individual classification is feasible and reliable and, however, is focused on the predictive performance of the clinical status in cross‐sectional designs, which has limited biological perspectives. Moreover, most studies depend on relatively small cohorts or single recruiting site. Finally, no study controlled for disease stage or medication's effect. These elements cast doubt on previous findings’ reproducibility. Method We propose a machine learning algorithm that provides an interpretable brain signature. Using large datasets collected from 4 sites (276 schizophrenia patients, 330 controls), we assessed cross‐site prediction reproducibility and associated predictive signature. For the first time, we evaluated the predictive signature regarding medication and illness duration using an independent dataset of first‐episode patients. Results Machine learning classifiers based on neuroanatomical features yield significant intersite prediction accuracies (72%) together with an excellent predictive signature stability. This signature provides a neural score significantly correlated with symptom severity and the extent of cognitive impairments. Moreover, this signature demonstrates its efficiency on first‐episode psychosis patients (73% accuracy). Conclusion These results highlight the existence of a common neuroanatomical signature for schizophrenia, shared by a majority of patients even from an early stage of the disorder.