Dynamic Cellular Cartography: Mapping the Local Determinants of Oligodendrocyte Transcription Factor 2 (OLIG2) Function in Live Cells Using Massively Parallel Fluorescence Correlation Spectroscopy Integrated with Fluorescence Lifetime Imaging Microscopy (mpFCS/FLIM)

• Published in: Analytical chemistry (Washington) 2021-09, Vol.93 (35), p.12011-12021
• Main Authors: Oasa, Sho, Krmpot, Aleksandar J, Nikolić, Stanko N, Clayton, Andrew H. A, Tsigelny, Igor F, Changeux, Jean-Pierre, Terenius, Lars, Rigler, Rudolf, Vukojević, Vladana
• Format: Article
• Language: English
• Subjects: Allosteric properties; Analytical methods; Binding; Cartography; Chemistry; Chromatin; Confocal microscopy; Cytoplasm; Deoxyribonucleic acid; Diffusion rate; Dimerization; DNA; Drug development; Fluorescence; Fluorescence spectroscopy; Green fluorescent protein; Imaging; Integration; Lateral diffusion; Mathematical analysis; Medical research; Medicin och hälsovetenskap; Microscopy; Nuclei (cytology); Olig2 protein; Pharmaceutical industry; Spectroscopy; Spectrum analysis; Temporal resolution; Therapeutic targets; Transcription factors
• ISSN: 0003-2700; 1520-6882; 1520-6882
• DOI: 10.1021/acs.analchem.1c02144

Compartmentalization and integration of molecular processes through diffusion are basic mechanisms through which cells perform biological functions. To characterize these mechanisms in live cells, quantitative and ultrasensitive analytical methods with high spatial and temporal resolution are needed. Here, we present quantitative scanning-free confocal microscopy with single-molecule sensitivity, high temporal resolution (∼10 μs/frame), and fluorescence lifetime imaging capacity, developed by integrating massively parallel fluorescence correlation spectroscopy with fluorescence lifetime imaging microscopy (mpFCS/FLIM); we validate the method, use it to map in live cell location-specific variations in the concentration, diffusion, homodimerization, DNA binding, and local environment of the oligodendrocyte transcription factor 2 fused with the enhanced Green Fluorescent Protein (OLIG2-eGFP), and characterize the effects of an allosteric inhibitor of OLIG2 dimerization on these determinants of OLIG2 function. In particular, we show that cytoplasmic OLIG2-eGFP is largely monomeric and freely diffusing, with the fraction of freely diffusing OLIG2-eGFP molecules being f D,free cyt = (0.75 ± 0.10) and the diffusion time τD,free cyt = (0.5 ± 0.3) ms. In contrast, OLIG2-eGFP homodimers are abundant in the cell nucleus, constituting ∼25% of the nuclear pool, some f D,bound nuc = (0.65 ± 0.10) of nuclear OLIG2-eGFP is bound to chromatin DNA, whereas freely moving OLIG2-eGFP molecules diffuse at the same rate as those in the cytoplasm, as evident from the lateral diffusion times τD,free nuc = τD,free cyt = (0.5 ± 0.3) ms. OLIG2-eGFP interactions with chromatin DNA, revealed through their influence on the apparent diffusion behavior of OLIG2-eGFP, τD,bound nuc (850 ± 500) ms, are characterized by an apparent dissociation constant K d,app OLIG2‑DNA = (45 ± 30) nM. The apparent dissociation constant of OLIG2-eGFP homodimers was estimated to be K d,app (OLIG2‑eGFP)2 ≈ 560 nM. The allosteric inhibitor of OLIG2 dimerization, compound NSC 50467, neither affects OLIG2-eGFP properties in the cytoplasm nor does it alter the overall cytoplasmic environment. In contrast, it significantly impedes OLIG2-eGFP homodimerization in the cell nucleus, increasing five-fold the apparent dissociation constant, K d,app,NSC50467 (OLIG2‑eGFP)2 ≈ 3 μM, thus reducing homodimer levels to below 7% and effectively abolishing OLIG2-eGFP specific binding to chromatin DNA. The mpFCS/FLIM methodology h